| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030548 | 3:5,494,609-5,498,313 | + | C1H3g21782 | C2H3g02073 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| CX3g029221 | 3:5,499,562-5,503,590 | - | C1H3g16227 | C2H3g12443 | LOC_Os03g11734 | Os03g0216700 | OsFRDL1 | Detail |
| CX3g029021 | 3:5,515,972-5,518,792 | + | C1H3g24567 | C2H3g18755 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| CX3g025795 | 3:5,522,636-5,527,416 | + | C1H3g18611 | C2H3g21216 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| CX3g025145 | 3:5,527,939-5,528,352 | - | C1H3g15471 | C2H3g13077 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| CX3g028210 | 3:5,530,124-5,530,723 | - | - | - | - | - | - | Detail |
| CX3g026323 | 3:5,530,292-5,534,720 | + | C1H3g22547 | C2H3g23651 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| CX3g026767 | 3:5,537,293-5,538,438 | - | C1H3g06016 | C2H3g23651 | LOC_Os03g11874 | Os03g0218200 | - | Detail |
| CX3g026533 | 3:5,539,833-5,544,435 | + | C1H3g25970 | C2H3g17874 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| CX3g031320 | 3:5,545,869-5,550,153 | - | C1H3g04450 | C2H3g10730 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| CX3g026335 | 3:5,554,593-5,554,754 | + | - | - | - | - | - | Detail |
| CX3g030309 | 3:5,555,883-5,559,054 | - | C1H3g10632 | C2H3g22152 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| CX3g025032 | 3:5,574,990-5,577,731 | + | C1H3g06308 | C2H3g13924 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| CX3g027163 | 3:5,580,948-5,583,985 | - | C1H3g24825 | C2H3g24481 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| CX3g028374 | 3:5,584,647-5,588,042 | - | C1H3g11590 | C2H3g03285 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| CX3g028318 | 3:5,589,687-5,591,608 | - | C1H3g20877 | C2H3g25818 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| CX3g029685 | 3:5,593,137-5,594,636 | + | C1H3g14036 | C2H3g26156 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| CX3g028368 | 3:5,596,887-5,598,608 | - | C1H3g26472 | C2H3g18310 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| CX3g026437 | 3:5,602,048-5,606,232 | + | C1H3g15777 | C2H3g00756 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| CX3g028610 | 3:5,606,723-5,608,775 | + | C1H3g13535 | C2H3g05450 | LOC_Os03g12020 | Os03g0219900 | - | Detail |