| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12948 | 3:2,877,761-2,883,142 | - | C2H3g11481 | CX3g029615 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| C1H3g19950 | 3:2,894,688-2,897,060 | + | C2H3g04338 | CX3g031150 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| C1H3g16884 | 3:2,904,785-2,907,181 | + | C2H3g04897 | CX3g029485 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| C1H3g31680 | 3:2,912,540-2,913,001 | - | C2H3g20671 | CX3g029738 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| C1H3g19723 | 3:2,928,792-2,930,967 | + | C2H3g16543 | CX3g029835 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| C1H3g17239 | 3:2,932,524-2,934,738 | + | C2H3g18983 | CX3g029527 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| C1H3g19807 | 3:2,946,701-2,949,199 | + | C2H3g18217 | CX3g030288 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| C1H3g07386 | 3:2,960,172-2,960,742 | + | C2H3g01853 | CX3g030521 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| C1H3g24759 | 3:2,968,215-2,969,716 | + | C2H3g21314 | CX3g025819 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| C1H3g16348 | 3:2,986,722-2,991,271 | + | C2H3g14410 | CX3g029826 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| C1H3g31273 | 3:2,991,976-2,995,226 | + | C2H3g28634 | - | - | - | - | Detail |
| C1H3g04672 | 3:2,998,751-3,000,234 | + | C2H3g03063 | - | - | Os03g0163000 | - | Detail |
| C1H3g10390 | 3:3,001,288-3,008,868 | + | C2H3g15393 | CX3g025042 | LOC_Os03g06720 | Os03g0163100 | - | Detail |
| C1H3g23541 | 3:3,009,056-3,010,541 | + | C2H3g06714 | CX3g025042 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| C1H3g17347 | 3:3,011,437-3,016,143 | + | C2H3g22693 | CX3g026090 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| C1H3g06657 | 3:3,016,729-3,017,562 | - | C2H3g01887 | CX3g029299 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| C1H3g03297 | 3:3,020,523-3,022,889 | + | C2H3g29355 | CX3g026455 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| C1H3g08120 | 3:3,028,406-3,028,651 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g17320 | 3:3,033,403-3,034,251 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g31538 | 3:3,051,875-3,054,321 | + | C2H3g08001 | CX3g031186 | LOC_Os03g06880 | Os03g0164700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030548 | 3:5,494,609-5,498,313 | + | C1H3g21782 | C2H3g02073 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| CX3g029221 | 3:5,499,562-5,503,590 | - | C1H3g16227 | C2H3g12443 | LOC_Os03g11734 | Os03g0216700 | OsFRDL1 | Detail |
| CX3g029021 | 3:5,515,972-5,518,792 | + | C1H3g24567 | C2H3g18755 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| CX3g025795 | 3:5,522,636-5,527,416 | + | C1H3g18611 | C2H3g21216 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| CX3g025145 | 3:5,527,939-5,528,352 | - | C1H3g15471 | C2H3g13077 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| CX3g028210 | 3:5,530,124-5,530,723 | - | - | - | - | - | - | Detail |
| CX3g026323 | 3:5,530,292-5,534,720 | + | C1H3g22547 | C2H3g23651 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| CX3g026767 | 3:5,537,293-5,538,438 | - | C1H3g06016 | C2H3g23651 | LOC_Os03g11874 | Os03g0218200 | - | Detail |
| CX3g026533 | 3:5,539,833-5,544,435 | + | C1H3g25970 | C2H3g17874 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| CX3g031320 | 3:5,545,869-5,550,153 | - | C1H3g04450 | C2H3g10730 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| CX3g026335 | 3:5,554,593-5,554,754 | + | - | - | - | - | - | Detail |
| CX3g030309 | 3:5,555,883-5,559,054 | - | C1H3g10632 | C2H3g22152 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| CX3g025032 | 3:5,574,990-5,577,731 | + | C1H3g06308 | C2H3g13924 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| CX3g027163 | 3:5,580,948-5,583,985 | - | C1H3g24825 | C2H3g24481 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| CX3g028374 | 3:5,584,647-5,588,042 | - | C1H3g11590 | C2H3g03285 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| CX3g028318 | 3:5,589,687-5,591,608 | - | C1H3g20877 | C2H3g25818 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| CX3g029685 | 3:5,593,137-5,594,636 | + | C1H3g14036 | C2H3g26156 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| CX3g028368 | 3:5,596,887-5,598,608 | - | C1H3g26472 | C2H3g18310 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| CX3g026437 | 3:5,602,048-5,606,232 | + | C1H3g15777 | C2H3g00756 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| CX3g028610 | 3:5,606,723-5,608,775 | + | C1H3g13535 | C2H3g05450 | LOC_Os03g12020 | Os03g0219900 | - | Detail |