| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g25908 | 5:13,757,972-13,758,595 | + | C2H5g04934 | CX5g041138 | LOC_Os05g29740 | Os05g0360900 | OsPMEI23 | Detail |
| C1H5g22546 | 5:13,760,833-13,762,580 | + | C2H5g01492 | CX5g040449 | LOC_Os05g29750 | Os05g0361000 | - | Detail |
| C1H5g08636 | 5:13,773,788-13,780,852 | + | C2H5g13846 | CX5g038793 | LOC_Os05g29760 | Os05g0361200 | - | Detail |
| C1H5g03254 | 5:13,793,958-13,797,428 | + | C2H5g25357 | CX5g040980 | LOC_Os05g29790 | Os05g0361500 | - | Detail |
| C1H5g12777 | 5:13,807,016-13,807,833 | + | C2H5g09274 | CX5g038564 | LOC_Os05g29810 | Os05g0361700 | - | Detail |
| C1H5g03219 | 5:13,823,973-13,827,962 | - | C2H5g20265 | CX5g039336 | LOC_Os05g29860 | Os05g0361900 | - | Detail |
| C1H5g04926 | 5:13,839,456-13,846,778 | + | C2H5g22364 | CX5g041061 | LOC_Os05g29880 | Os05g0362100 | - | Detail |
| C1H5g27955 | 5:13,860,355-13,860,879 | + | C2H5g20791 | CX5g039354 | LOC_Os05g29900 | Os05g0362300 | - | Detail |
| C1H5g20956 | 5:13,866,854-13,867,399 | + | C2H5g20791 | CX5g039061 | LOC_Os05g29920 | Os05g0362500 | - | Detail |
| C1H5g07799 | 5:13,869,212-13,869,985 | - | C2H5g18229 | CX5g039620 | LOC_Os05g29930 | Os05g0362600 | - | Detail |
| C1H5g17400 | 5:13,882,049-13,882,531 | + | C2H5g03181 | CX5g038225 | - | Os05g0120000 | - | Detail |
| C1H5g12419 | 5:13,886,678-13,888,228 | + | C2H5g11320 | CX5g039330 | LOC_Os05g29974 | Os05g0363100 | - | Detail |
| C1H5g29412 | 5:13,891,243-13,893,088 | + | C2H5g08574 | CX5g039330 | LOC_Os05g29974 | Os05g0363100 | - | Detail |
| C1H5g15955 | 5:13,893,174-13,897,330 | - | C2H5g00252 | CX5g040639 | LOC_Os05g29990 | Os05g0363200 | OsUXS5 | Detail |
| C1H5g25034 | 5:13,912,669-13,920,066 | - | C2H5g08499 | CX5g040379 | LOC_Os05g30010 | Os05g0363500 | - | Detail |
| C1H5g26689 | 5:13,933,778-13,934,176 | - | C2H5g14151 | CX5g038648 | LOC_Os05g30030 | Os05g0363600 | - | Detail |
| C1H5g31895 | 5:13,951,468-13,954,464 | - | C2H5g11223 | CX5g038831 | LOC_Os05g30130 | Os05g0364500 | - | Detail |
| C1H5g05062 | 5:13,955,162-13,961,322 | + | C2H5g10985 | CX5g039200 | LOC_Os05g30140 | Os05g0364600 | OsSR34 | Detail |
| C1H5g13319 | 5:13,963,781-13,965,110 | - | C2H5g24216 | CX5g040302 | LOC_Os05g30160 | - | - | Detail |
| C1H5g14982 | 5:13,975,896-13,976,999 | + | - | - | LOC_Os05g30190 | Os05g0365000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001283 | 1:13,769,240-13,769,464 | - | - | - | - | Os09g0373750 | - | Detail |
| CX1g003305 | 1:13,782,320-13,782,511 | + | - | - | - | - | - | Detail |
| CX1g003934 | 1:13,784,988-13,791,999 | + | C1H1g21458 | C2H1g03369 | LOC_Os01g27020 | Os01g0367700 | - | Detail |
| CX1g006855 | 1:13,798,861-13,805,895 | - | C1H1g24923 | C2H1g04184 | LOC_Os01g27040 | Os01g0367900 | OsCHR728, CHR728, OsCHR11 | Detail |
| CX1g002622 | 1:13,808,166-13,809,557 | - | - | - | - | - | - | Detail |
| CX1g001803 | 1:13,814,944-13,815,279 | + | - | - | - | - | - | Detail |
| CX1g000946 | 1:13,817,316-13,817,597 | - | - | - | LOC_Os01g28380 | - | - | Detail |
| CX1g000728 | 1:13,822,321-13,823,657 | + | C1H1g29900 | C2H1g05311 | LOC_Os01g27100 | Os01g0368500 | - | Detail |
| CX1g000035 | 1:13,829,483-13,830,130 | + | C1H1g29900 | C2H1g05311 | LOC_Os01g27120 | Os01g0368700 | - | Detail |
| CX1g004970 | 1:13,836,989-13,837,267 | - | - | - | - | - | - | Detail |
| CX1g004894 | 1:13,841,178-13,841,386 | - | - | - | - | - | - | Detail |
| CX1g002302 | 1:13,845,046-13,852,808 | - | C1H1g21071 | C2H1g23898 | LOC_Os01g27150 | Os01g0369000 | - | Detail |
| CX1g000076 | 1:13,857,137-13,857,289 | + | - | - | - | - | - | Detail |
| CX1g007040 | 1:13,860,973-13,866,371 | + | C1H1g21722 | C2H1g08610 | LOC_Os01g27160 | Os01g0369200 | OsCUL1-3 | Detail |
| CX1g002985 | 1:13,866,896-13,871,581 | - | C1H1g09984 | C2H1g00961 | LOC_Os01g27170 | Os01g0369300 | OsHAK3 | Detail |
| CX1g004644 | 1:13,874,924-13,875,937 | + | C1H1g21027 | C2H1g23105 | LOC_Os01g27190 | Os01g0369500 | - | Detail |
| CX1g005028 | 1:13,879,674-13,880,133 | + | C1H1g28118 | C2H1g16294 | - | - | - | Detail |
| CX1g002058 | 1:13,884,746-13,886,038 | - | C1H1g15388 | C2H1g16460 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| CX1g005613 | 1:13,904,180-13,905,431 | - | C1H1g03904 | C2H1g16460 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| CX1g005792 | 1:13,906,318-13,906,641 | - | - | - | - | - | - | Detail |