| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01758 | 1:28,615,409-28,617,022 | + | C2H1g14280 | CX1g003567 | LOC_Os01g55570 | Os01g0761000 | - | Detail |
| C1H1g03450 | 1:28,616,955-28,623,285 | - | C2H1g02714 | CX1g001741 | LOC_Os01g55580 | Os01g0761100 | - | Detail |
| C1H1g17949 | 1:28,631,111-28,637,810 | + | C2H1g29776 | CX1g001107 | LOC_Os01g55590 | Os01g0761300 | - | Detail |
| C1H1g13293 | 1:28,637,997-28,640,177 | - | C2H1g30373 | CX1g004639 | LOC_Os01g55600 | Os01g0761400 | - | Detail |
| C1H1g18764 | 1:28,643,565-28,645,584 | - | C2H1g11332 | CX1g005836 | LOC_Os01g55610 | Os01g0761500 | - | Detail |
| C1H1g20205 | 1:28,654,830-28,656,327 | + | C2H1g14975 | CX1g005220 | LOC_Os01g55690 | Os01g0761800 | - | Detail |
| C1H1g25958 | 1:28,660,606-28,661,582 | + | C2H1g22476 | CX1g002406 | LOC_Os01g55640 | Os01g0761900 | - | Detail |
| C1H1g07257 | 1:28,661,720-28,666,290 | - | C2H1g16751 | CX1g004093 | LOC_Os01g55650 | Os01g0762000 | - | Detail |
| C1H1g22782 | 1:28,668,008-28,669,114 | - | C2H1g07048 | - | LOC_Os01g55670 | Os01g0762300 | - | Detail |
| C1H1g21751 | 1:28,671,169-28,673,405 | - | C2H1g10676 | CX5g040071 | LOC_Os01g55700 | Os01g0762400 | - | Detail |
| C1H1g08828 | 1:28,673,583-28,675,357 | + | C2H1g14975 | CX1g005220 | LOC_Os01g55690 | Os01g0762500 | GluA-1 | Detail |
| C1H1g15736 | 1:28,676,208-28,679,162 | - | C2H1g07008 | CX1g000972 | LOC_Os01g55700 | Os01g0762400 | - | Detail |
| C1H1g29162 | 1:28,684,660-28,687,810 | - | C2H1g29169 | CX1g006292 | LOC_Os01g55730 | Os01g0763000 | - | Detail |
| C1H1g04887 | 1:28,688,075-28,692,494 | + | C2H1g11671 | CX1g000567 | LOC_Os01g55740 | Os01g0763100 | - | Detail |
| C1H1g18251 | 1:28,726,302-28,726,898 | - | - | CX1g004077 | LOC_Os01g55770 | Os01g0763300 | - | Detail |
| C1H1g26251 | 1:28,729,422-28,735,597 | + | C2H1g05498 | CX1g006008 | LOC_Os01g55780 | Os01g0763600 | - | Detail |
| C1H1g12289 | 1:28,736,201-28,737,654 | + | C2H1g26721 | CX1g004690 | - | Os01g0763700 | - | Detail |
| C1H1g15141 | 1:28,740,225-28,742,030 | + | C2H1g26721 | CX1g004690 | LOC_Os01g55799 | Os01g0763750 | - | Detail |
| C1H1g12916 | 1:28,742,691-28,744,039 | - | C2H1g06960 | CX1g005089 | LOC_Os01g55795 | Os01g0763800 | - | Detail |
| C1H1g27744 | 1:28,744,944-28,745,858 | - | C2H1g25518 | CX1g005089 | LOC_Os01g55820 | Os01g0763900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001283 | 1:13,769,240-13,769,464 | - | - | - | - | Os09g0373750 | - | Detail |
| CX1g003305 | 1:13,782,320-13,782,511 | + | - | - | - | - | - | Detail |
| CX1g003934 | 1:13,784,988-13,791,999 | + | C1H1g21458 | C2H1g03369 | LOC_Os01g27020 | Os01g0367700 | - | Detail |
| CX1g006855 | 1:13,798,861-13,805,895 | - | C1H1g24923 | C2H1g04184 | LOC_Os01g27040 | Os01g0367900 | OsCHR728, CHR728, OsCHR11 | Detail |
| CX1g002622 | 1:13,808,166-13,809,557 | - | - | - | - | - | - | Detail |
| CX1g001803 | 1:13,814,944-13,815,279 | + | - | - | - | - | - | Detail |
| CX1g000946 | 1:13,817,316-13,817,597 | - | - | - | LOC_Os01g28380 | - | - | Detail |
| CX1g000728 | 1:13,822,321-13,823,657 | + | C1H1g29900 | C2H1g05311 | LOC_Os01g27100 | Os01g0368500 | - | Detail |
| CX1g000035 | 1:13,829,483-13,830,130 | + | C1H1g29900 | C2H1g05311 | LOC_Os01g27120 | Os01g0368700 | - | Detail |
| CX1g004970 | 1:13,836,989-13,837,267 | - | - | - | - | - | - | Detail |
| CX1g004894 | 1:13,841,178-13,841,386 | - | - | - | - | - | - | Detail |
| CX1g002302 | 1:13,845,046-13,852,808 | - | C1H1g21071 | C2H1g23898 | LOC_Os01g27150 | Os01g0369000 | - | Detail |
| CX1g000076 | 1:13,857,137-13,857,289 | + | - | - | - | - | - | Detail |
| CX1g007040 | 1:13,860,973-13,866,371 | + | C1H1g21722 | C2H1g08610 | LOC_Os01g27160 | Os01g0369200 | OsCUL1-3 | Detail |
| CX1g002985 | 1:13,866,896-13,871,581 | - | C1H1g09984 | C2H1g00961 | LOC_Os01g27170 | Os01g0369300 | OsHAK3 | Detail |
| CX1g004644 | 1:13,874,924-13,875,937 | + | C1H1g21027 | C2H1g23105 | LOC_Os01g27190 | Os01g0369500 | - | Detail |
| CX1g005028 | 1:13,879,674-13,880,133 | + | C1H1g28118 | C2H1g16294 | - | - | - | Detail |
| CX1g002058 | 1:13,884,746-13,886,038 | - | C1H1g15388 | C2H1g16460 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| CX1g005613 | 1:13,904,180-13,905,431 | - | C1H1g03904 | C2H1g16460 | LOC_Os01g27210 | Os01g0369700 | - | Detail |
| CX1g005792 | 1:13,906,318-13,906,641 | - | - | - | - | - | - | Detail |