| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23173 | 4:20,134,233-20,137,730 | + | C2H4g15046 | CX4g031560 | LOC_Os04g38870 | Os04g0462500 | - | Detail |
| C1H4g05269 | 4:20,138,431-20,140,481 | - | C2H4g09025 | CX4g033001 | LOC_Os04g38880 | Os04g0462600 | - | Detail |
| C1H4g30627 | 4:20,146,849-20,147,703 | - | C2H4g27908 | CX4g034025 | LOC_Os04g38900 | Os04g0462900 | - | Detail |
| C1H4g28569 | 4:20,149,829-20,152,398 | - | C2H4g10984 | CX4g032418 | LOC_Os04g38910 | Os04g0463000 | - | Detail |
| C1H4g14030 | 4:20,158,006-20,158,918 | - | - | - | - | - | - | Detail |
| C1H4g28377 | 4:20,163,434-20,164,307 | - | C2H4g23255 | CX4g034571 | LOC_Os09g23300 | Os04g0463400 | OsVIT1;2 OsVIT1 | Detail |
| C1H4g31445 | 4:20,165,453-20,165,896 | - | C2H4g07912 | CX4g034571 | LOC_Os04g38940 | Os04g0463400 | OsVIT1;2 OsVIT1 | Detail |
| C1H4g09561 | 4:20,169,229-20,172,624 | - | C2H4g28763 | CX4g036538 | LOC_Os04g38950 | Os04g0463500 | TDD1, OASB1 | Detail |
| C1H4g11967 | 4:20,174,541-20,177,039 | + | C2H4g28177 | CX4g033159 | LOC_Os04g38960 | Os04g0463600 | - | Detail |
| C1H4g05080 | 4:20,179,690-20,181,500 | - | C2H4g13162 | CX4g033067 | LOC_Os04g38970 | Os04g0463700 | - | Detail |
| C1H4g02516 | 4:20,181,910-20,188,388 | - | C2H4g07932 | CX4g036672 | LOC_Os04g38980 | Os04g0463800 | - | Detail |
| C1H4g21091 | 4:20,199,235-20,199,681 | - | - | - | - | - | - | Detail |
| C1H4g01794 | 4:20,200,816-20,205,566 | - | C2H4g13985 | CX4g032487 | LOC_Os04g39020 | Os04g0464200 | BAD1, Badh1, badh1, BAD1, BADH1, OsBADH1, BADH | Detail |
| C1H4g07451 | 4:20,208,347-20,212,309 | - | C2H4g00984 | CX4g035491 | LOC_Os04g39030 | Os04g0464400 | - | Detail |
| C1H4g23214 | 4:20,215,020-20,219,987 | + | C2H4g04170 | CX4g031502 | LOC_Os04g39040 | Os04g0464500 | - | Detail |
| C1H4g17346 | 4:20,223,164-20,223,448 | - | C2H4g17707 | - | - | - | - | Detail |
| C1H4g20578 | 4:20,230,246-20,230,536 | - | C2H4g26653 | CX4g036034 | - | - | - | Detail |
| C1H4g22118 | 4:20,242,943-20,249,032 | - | C2H4g00542 | CX4g035608 | LOC_Os04g39060 | Os04g0464800 | OsCFM2 | Detail |
| C1H4g16307 | 4:20,253,424-20,254,077 | - | C2H4g07256 | - | - | Os07g0567801 | - | Detail |
| C1H4g10402 | 4:20,258,867-20,259,130 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030208 | 3:5,081,631-5,082,761 | + | C1H3g20245 | C2H3g03215 | LOC_Os03g14310 | Os03g0247300 | Sc, Sc-j | Detail |
| CX3g026445 | 3:5,087,433-5,088,308 | + | C1H3g10782 | C2H3g29617 | LOC_Os03g11100 | Os03g0209400 | GOT1B, GLUP2/GOT1B, GPA4 | Detail |
| CX3g027814 | 3:5,089,280-5,093,407 | - | C1H3g28553 | C2H3g20518 | LOC_Os03g11110 | Os03g0209500 | - | Detail |
| CX3g027707 | 3:5,097,738-5,104,858 | + | C1H3g28595 | C2H3g02047 | LOC_Os03g11120 | Os03g0209600 | - | Detail |
| CX3g029679 | 3:5,105,801-5,108,916 | + | C1H3g28031 | C2H3g27933 | LOC_Os03g15190 | Os03g0209700 | - | Detail |
| CX3g026421 | 3:5,111,803-5,121,928 | + | C1H3g31436 | C2H3g21412 | LOC_Os03g11140 | Os03g0209800 | - | Detail |
| CX3g027593 | 3:5,126,190-5,126,528 | - | C1H3g26339 | C2H3g16472 | LOC_Os03g11160 | Os03g0210000 | - | Detail |
| CX3g025375 | 3:5,128,687-5,129,040 | - | C1H3g24055 | C2H3g27277 | LOC_Os03g11170 | Os03g0210100 | - | Detail |
| CX3g024954 | 3:5,129,670-5,130,456 | + | - | - | LOC_Os03g11430 | - | - | Detail |
| CX3g028377 | 3:5,131,440-5,131,796 | - | C1H3g27613 | C2H3g18125 | LOC_Os03g11180 | Os03g0210200 | - | Detail |
| CX3g029308 | 3:5,135,678-5,141,736 | - | C1H3g13004 | C2H3g21913 | LOC_Os03g11200 | Os03g0210400 | - | Detail |
| CX3g027935 | 3:5,143,066-5,143,290 | - | - | - | - | Os03g0606466 | - | Detail |
| CX3g030415 | 3:5,145,410-5,147,641 | + | C1H3g15282 | C2H3g25075 | LOC_Os03g11210 | Os03g0210500 | - | Detail |
| CX3g031148 | 3:5,150,413-5,151,558 | - | C1H3g18916 | C2H3g24832 | LOC_Os03g11220 | Os03g0210600 | - | Detail |
| CX3g025909 | 3:5,152,360-5,153,348 | + | C1H3g29587 | C2H3g17169 | LOC_Os03g11230 | Os03g0210700 | - | Detail |
| CX3g029919 | 3:5,155,984-5,163,146 | - | C1H3g28959 | C2H3g29083 | LOC_Os03g11240 | Os03g0210800 | - | Detail |
| CX3g028792 | 3:5,167,868-5,168,346 | + | C1H3g06712 | C2H3g10848 | LOC_Os03g11250 | Os03g0210900 | - | Detail |
| CX3g028627 | 3:5,171,518-5,173,228 | + | C1H3g11024 | C2H3g14713 | LOC_Os03g11260 | Os03g0211100 | - | Detail |
| CX3g028711 | 3:5,184,563-5,186,869 | + | - | C2H3g08476 | LOC_Os03g11290 | Os03g0211400 | - | Detail |
| CX3g028056 | 3:5,187,823-5,189,879 | - | C1H3g14759 | C2H3g19439 | LOC_Os03g11300 | Os03g0211500 | - | Detail |