| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16001 | 3:10,173,735-10,175,036 | + | C2H3g05954 | CX3g026260 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| C1H3g07890 | 3:10,192,334-10,193,545 | + | C2H3g08312 | CX3g025491 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| C1H3g20479 | 3:10,200,586-10,201,880 | + | C2H3g29183 | CX3g028957 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| C1H3g31254 | 3:10,203,377-10,209,318 | - | C2H3g10315 | CX3g024974 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| C1H3g27797 | 3:10,209,753-10,214,845 | - | C2H3g15586 | CX3g025701 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |
| C1H3g25597 | 3:10,233,111-10,233,644 | + | C2H3g06773 | CX3g031095 | LOC_Os03g20330 | Os03g0319000 | - | Detail |
| C1H3g29099 | 3:10,242,233-10,246,996 | + | C2H3g23539 | CX3g030494 | LOC_Os03g20340 | Os03g0319100 | - | Detail |
| C1H3g19829 | 3:10,254,192-10,255,623 | + | C2H3g28901 | CX3g028434 | LOC_Os03g20350 | Os03g0319200 | - | Detail |
| C1H3g23043 | 3:10,259,154-10,260,436 | + | C2H3g27412 | CX3g031077 | LOC_Os03g20370 | Os03g0319300 | OsCam1-1, OsCaM1-1, OsCaM1 | Detail |
| C1H3g21490 | 3:10,262,867-10,268,355 | - | C2H3g25279 | CX3g026317 | LOC_Os03g20380 | Os03g0319400 | - | Detail |
| C1H3g25971 | 3:10,281,082-10,284,619 | - | C2H3g09371 | CX3g025212 | LOC_Os03g20410 | Os03g0320000 | OsSIP2 | Detail |
| C1H3g08252 | 3:10,290,492-10,298,627 | - | C2H3g22340 | CX3g029293 | LOC_Os03g20420 | Os03g0320100 | - | Detail |
| C1H3g09342 | 3:10,303,100-10,304,444 | + | C2H3g01972 | CX3g029244 | LOC_Os03g20430 | Os03g0320400 | - | Detail |
| C1H3g07396 | 3:10,310,058-10,310,714 | - | C2H3g13875 | CX3g027813 | LOC_Os03g20440 | Os03g0320600 | - | Detail |
| C1H3g21035 | 3:10,326,442-10,331,578 | + | C2H3g23140 | CX3g030303 | LOC_Os03g20450 | Os03g0320800 | - | Detail |
| C1H3g22135 | 3:10,334,633-10,337,401 | + | C2H3g14660 | CX3g027683 | LOC_Os03g20460 | Os03g0320900 | V2, pt/mtGK | Detail |
| C1H3g27273 | 3:10,338,765-10,341,238 | + | C2H3g12919 | CX3g026494 | LOC_Os03g20470 | Os03g0321000 | - | Detail |
| C1H3g19861 | 3:10,351,468-10,352,613 | + | C2H3g01230 | CX3g029583 | LOC_Os03g20500 | Os03g0321300 | - | Detail |
| C1H3g31579 | 3:10,352,696-10,352,992 | - | C2H3g17781 | - | - | - | - | Detail |
| C1H3g05314 | 3:10,360,363-10,366,269 | - | C2H3g10177 | CX3g030418 | LOC_Os03g20520 | Os03g0321400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030208 | 3:5,081,631-5,082,761 | + | C1H3g20245 | C2H3g03215 | LOC_Os03g14310 | Os03g0247300 | Sc, Sc-j | Detail |
| CX3g026445 | 3:5,087,433-5,088,308 | + | C1H3g10782 | C2H3g29617 | LOC_Os03g11100 | Os03g0209400 | GOT1B, GLUP2/GOT1B, GPA4 | Detail |
| CX3g027814 | 3:5,089,280-5,093,407 | - | C1H3g28553 | C2H3g20518 | LOC_Os03g11110 | Os03g0209500 | - | Detail |
| CX3g027707 | 3:5,097,738-5,104,858 | + | C1H3g28595 | C2H3g02047 | LOC_Os03g11120 | Os03g0209600 | - | Detail |
| CX3g029679 | 3:5,105,801-5,108,916 | + | C1H3g28031 | C2H3g27933 | LOC_Os03g15190 | Os03g0209700 | - | Detail |
| CX3g026421 | 3:5,111,803-5,121,928 | + | C1H3g31436 | C2H3g21412 | LOC_Os03g11140 | Os03g0209800 | - | Detail |
| CX3g027593 | 3:5,126,190-5,126,528 | - | C1H3g26339 | C2H3g16472 | LOC_Os03g11160 | Os03g0210000 | - | Detail |
| CX3g025375 | 3:5,128,687-5,129,040 | - | C1H3g24055 | C2H3g27277 | LOC_Os03g11170 | Os03g0210100 | - | Detail |
| CX3g024954 | 3:5,129,670-5,130,456 | + | - | - | LOC_Os03g11430 | - | - | Detail |
| CX3g028377 | 3:5,131,440-5,131,796 | - | C1H3g27613 | C2H3g18125 | LOC_Os03g11180 | Os03g0210200 | - | Detail |
| CX3g029308 | 3:5,135,678-5,141,736 | - | C1H3g13004 | C2H3g21913 | LOC_Os03g11200 | Os03g0210400 | - | Detail |
| CX3g027935 | 3:5,143,066-5,143,290 | - | - | - | - | Os03g0606466 | - | Detail |
| CX3g030415 | 3:5,145,410-5,147,641 | + | C1H3g15282 | C2H3g25075 | LOC_Os03g11210 | Os03g0210500 | - | Detail |
| CX3g031148 | 3:5,150,413-5,151,558 | - | C1H3g18916 | C2H3g24832 | LOC_Os03g11220 | Os03g0210600 | - | Detail |
| CX3g025909 | 3:5,152,360-5,153,348 | + | C1H3g29587 | C2H3g17169 | LOC_Os03g11230 | Os03g0210700 | - | Detail |
| CX3g029919 | 3:5,155,984-5,163,146 | - | C1H3g28959 | C2H3g29083 | LOC_Os03g11240 | Os03g0210800 | - | Detail |
| CX3g028792 | 3:5,167,868-5,168,346 | + | C1H3g06712 | C2H3g10848 | LOC_Os03g11250 | Os03g0210900 | - | Detail |
| CX3g028627 | 3:5,171,518-5,173,228 | + | C1H3g11024 | C2H3g14713 | LOC_Os03g11260 | Os03g0211100 | - | Detail |
| CX3g028711 | 3:5,184,563-5,186,869 | + | - | C2H3g08476 | LOC_Os03g11290 | Os03g0211400 | - | Detail |
| CX3g028056 | 3:5,187,823-5,189,879 | - | C1H3g14759 | C2H3g19439 | LOC_Os03g11300 | Os03g0211500 | - | Detail |