| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g21672 | 5:13,307,285-13,313,387 | - | C2H5g02545 | - | LOC_Os05g28480 | Os05g0352800 | RBR7 | Detail |
| C1H5g04197 | 5:13,310,645-13,311,966 | + | - | - | - | - | - | Detail |
| C1H5g31266 | 5:13,315,547-13,320,758 | + | C2H5g16901 | CX5g037212 | LOC_Os05g28500 | Os05g0353300 | - | Detail |
| C1H5g01450 | 5:13,325,963-13,330,757 | + | C2H5g04356 | CX5g036875 | LOC_Os05g28510 | Os05g0353400 | - | Detail |
| C1H5g21568 | 5:13,331,436-13,334,113 | - | C2H5g23280 | CX5g037535 | LOC_Os05g28520 | Os05g0353500 | - | Detail |
| C1H5g23709 | 5:13,348,125-13,348,862 | - | C2H5g10143 | CX5g037860 | LOC_Os05g28530 | Os05g0353600 | - | Detail |
| C1H5g30908 | 5:13,367,416-13,389,865 | + | C2H5g14457 | CX5g038072 | - | Os05g0354300 | - | Detail |
| C1H5g19735 | 5:13,393,259-13,397,139 | - | C2H5g03381 | CX5g039139 | LOC_Os05g28630 | Os05g0354400 | - | Detail |
| C1H5g04066 | 5:13,432,382-13,438,186 | + | C2H5g23698 | CX5g038844 | LOC_Os05g28690 | Os05g0355133 | - | Detail |
| C1H5g04813 | 5:13,445,126-13,447,024 | + | C2H5g01078 | CX5g039985 | LOC_Os05g28720 | Os05g0355200 | - | Detail |
| C1H5g01589 | 5:13,450,125-13,452,630 | - | C2H5g12189 | CX5g039115 | LOC_Os05g28730 | Os05g0355300 | - | Detail |
| C1H5g26406 | 5:13,458,955-13,459,840 | + | C2H5g22794 | CX5g039096 | LOC_Os05g28740 | Os05g0355400 | - | Detail |
| C1H5g06096 | 5:13,460,749-13,461,710 | - | C2H5g06435 | CX5g037815 | LOC_Os05g28750 | Os05g0355500 | - | Detail |
| C1H5g09726 | 5:13,467,250-13,469,873 | + | C2H5g10884 | CX5g040847 | LOC_Os05g28770 | Os05g0355700 | - | Detail |
| C1H5g23139 | 5:13,471,550-13,472,837 | + | C2H5g23986 | CX5g036860 | LOC_Os05g28780 | Os05g0355900 | - | Detail |
| C1H5g02044 | 5:13,472,420-13,473,756 | - | - | - | - | - | - | Detail |
| C1H5g03602 | 5:13,476,212-13,481,472 | - | C2H5g26311 | - | - | - | - | Detail |
| C1H5g01226 | 5:13,493,638-13,493,982 | + | - | CX5g040328 | LOC_Os05g28820 | Os05g0356600 | - | Detail |
| C1H5g23229 | 5:13,515,320-13,515,979 | + | C2H5g00165 | CX5g036750 | LOC_Os05g28810 | Os05g0356500 | - | Detail |
| C1H5g08137 | 5:13,522,655-13,524,193 | - | C2H5g07794 | CX5g036996 | LOC_Os05g28830 | Os05g0356700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029010 | 3:4,938,374-4,942,486 | - | C1H3g13621 | C2H3g12127 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| CX3g029900 | 3:4,948,232-4,948,381 | - | - | - | - | - | - | Detail |
| CX3g031089 | 3:4,949,729-4,949,941 | - | - | - | - | - | - | Detail |
| CX3g025706 | 3:4,959,021-4,963,569 | - | C1H3g08320 | C2H3g24955 | LOC_Os03g10850 | Os03g0206201 | - | Detail |
| CX3g025216 | 3:4,977,018-4,979,489 | + | C1H3g23004 | C2H3g30671 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| CX3g028250 | 3:4,980,917-4,983,435 | - | C1H3g06410 | C2H3g08057 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| CX3g028910 | 3:4,985,001-4,986,853 | + | C1H3g27718 | C2H3g20915 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| CX3g026802 | 3:5,006,225-5,007,834 | - | C1H3g00893 | C2H3g10611 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| CX3g025332 | 3:5,008,783-5,010,441 | - | C1H3g01133 | C2H3g21091 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| CX3g026481 | 3:5,011,435-5,015,892 | - | C1H3g28849 | C2H3g16402 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| CX3g029049 | 3:5,017,606-5,019,882 | - | - | - | - | - | - | Detail |
| CX3g026300 | 3:5,024,249-5,025,598 | + | C1H3g06136 | C2H3g22551 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| CX3g028734 | 3:5,030,047-5,032,298 | + | C1H3g30385 | C2H3g27737 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| CX3g029045 | 3:5,035,132-5,038,486 | - | C1H3g09911 | C2H3g03380 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| CX3g026306 | 3:5,040,273-5,043,826 | - | C1H3g06609 | C2H3g00163 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| CX3g026296 | 3:5,058,724-5,060,316 | + | C1H3g30012 | C2H3g10069 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| CX3g026122 | 3:5,062,512-5,065,416 | + | C1H3g13525 | C2H3g05594 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| CX3g030551 | 3:5,067,323-5,070,165 | + | C1H3g23847 | C2H3g02775 | LOC_Os03g11040 | Os03g0208800 | - | Detail |
| CX3g025131 | 3:5,070,995-5,075,212 | - | C1H3g19795 | C2H3g21926 | LOC_Os03g11050 | Os03g0208900 | - | Detail |
| CX3g026202 | 3:5,076,834-5,077,307 | + | C1H3g29509 | C2H3g02600 | LOC_Os03g11060 | Os03g0209000 | - | Detail |