| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g17421 | 4:7,246,194-7,249,276 | + | C2H4g23707 | CX4g035840 | LOC_Os04g15580 | Os04g0226600 | SDK5 | Detail |
| C1H4g13475 | 4:7,291,945-7,297,622 | + | C2H4g25122 | CX4g031366 | LOC_Os04g15630 | Os04g0226800 | - | Detail |
| C1H4g00401 | 4:7,313,161-7,313,510 | - | C2H4g17108 | CX4g036483 | - | - | - | Detail |
| C1H4g23086 | 4:7,315,726-7,319,359 | + | C2H4g21260 | CX4g031429 | LOC_Os04g15650 | Os04g0227000 | - | Detail |
| C1H4g29899 | 4:7,323,149-7,326,212 | + | C2H4g25122 | CX4g032952 | LOC_Os04g15660 | Os04g0227200 | - | Detail |
| C1H4g14643 | 4:7,326,875-7,327,342 | + | - | - | LOC_Os04g15670 | - | - | Detail |
| C1H4g05741 | 4:7,327,550-7,328,194 | + | C2H4g20815 | CX4g034260 | - | - | - | Detail |
| C1H4g21393 | 4:7,348,315-7,353,116 | + | C2H4g23720 | CX4g031813 | LOC_Os04g15690 | Os04g0227500 | - | Detail |
| C1H4g20234 | 4:7,401,306-7,407,705 | + | C2H4g14611 | CX4g031792 | LOC_Os04g15790 | Os04g0228000 | - | Detail |
| C1H4g18604 | 4:7,408,692-7,410,261 | - | C2H4g07965 | CX4g034799 | LOC_Os04g15800 | Os04g0228100 | - | Detail |
| C1H4g11154 | 4:7,429,401-7,430,300 | + | C2H4g30466 | CX4g032333 | LOC_Os04g15840 | Os04g0228400 | - | Detail |
| C1H4g10435 | 4:7,529,155-7,530,913 | + | C2H4g04987 | CX4g032650 | LOC_Os04g15920 | Os04g0229100 | - | Detail |
| C1H4g12432 | 4:7,645,798-7,647,573 | - | C2H4g16212 | CX4g035418 | LOC_Os04g16450 | Os04g0233400 | - | Detail |
| C1H4g05686 | 4:7,690,602-7,691,311 | - | C2H4g27955 | CX4g031918 | - | - | - | Detail |
| C1H4g27994 | 4:7,693,309-7,693,917 | - | C2H4g26981 | CX4g032553 | LOC_Os04g16670 | Os04g0234500 | - | Detail |
| C1H4g21505 | 4:7,696,459-7,698,967 | - | C2H4g10242 | CX4g033851 | LOC_Os04g16680 | Os04g0234600 | - | Detail |
| C1H4g27374 | 4:7,705,669-7,708,530 | - | - | - | - | - | - | Detail |
| C1H4g23703 | 4:7,737,481-7,737,828 | - | C2H4g15292 | CX4g031641 | LOC_Os04g16970 | Os04g0243700 | - | Detail |
| C1H4g06530 | 4:7,827,242-7,834,569 | + | C2H4g16796 | CX4g036392 | LOC_Os04g17050 | Os04g0244400 | - | Detail |
| C1H4g21440 | 4:7,837,425-7,838,084 | + | C2H4g15471 | CX4g033261 | - | Os04g0244500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029010 | 3:4,938,374-4,942,486 | - | C1H3g13621 | C2H3g12127 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| CX3g029900 | 3:4,948,232-4,948,381 | - | - | - | - | - | - | Detail |
| CX3g031089 | 3:4,949,729-4,949,941 | - | - | - | - | - | - | Detail |
| CX3g025706 | 3:4,959,021-4,963,569 | - | C1H3g08320 | C2H3g24955 | LOC_Os03g10850 | Os03g0206201 | - | Detail |
| CX3g025216 | 3:4,977,018-4,979,489 | + | C1H3g23004 | C2H3g30671 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| CX3g028250 | 3:4,980,917-4,983,435 | - | C1H3g06410 | C2H3g08057 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| CX3g028910 | 3:4,985,001-4,986,853 | + | C1H3g27718 | C2H3g20915 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| CX3g026802 | 3:5,006,225-5,007,834 | - | C1H3g00893 | C2H3g10611 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| CX3g025332 | 3:5,008,783-5,010,441 | - | C1H3g01133 | C2H3g21091 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| CX3g026481 | 3:5,011,435-5,015,892 | - | C1H3g28849 | C2H3g16402 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| CX3g029049 | 3:5,017,606-5,019,882 | - | - | - | - | - | - | Detail |
| CX3g026300 | 3:5,024,249-5,025,598 | + | C1H3g06136 | C2H3g22551 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| CX3g028734 | 3:5,030,047-5,032,298 | + | C1H3g30385 | C2H3g27737 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| CX3g029045 | 3:5,035,132-5,038,486 | - | C1H3g09911 | C2H3g03380 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| CX3g026306 | 3:5,040,273-5,043,826 | - | C1H3g06609 | C2H3g00163 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| CX3g026296 | 3:5,058,724-5,060,316 | + | C1H3g30012 | C2H3g10069 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| CX3g026122 | 3:5,062,512-5,065,416 | + | C1H3g13525 | C2H3g05594 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| CX3g030551 | 3:5,067,323-5,070,165 | + | C1H3g23847 | C2H3g02775 | LOC_Os03g11040 | Os03g0208800 | - | Detail |
| CX3g025131 | 3:5,070,995-5,075,212 | - | C1H3g19795 | C2H3g21926 | LOC_Os03g11050 | Os03g0208900 | - | Detail |
| CX3g026202 | 3:5,076,834-5,077,307 | + | C1H3g29509 | C2H3g02600 | LOC_Os03g11060 | Os03g0209000 | - | Detail |