| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10229 | 4:3,577,684-3,577,877 | + | - | - | LOC_Os04g08836 | - | - | Detail |
| C1H4g24051 | 4:3,584,279-3,586,466 | + | C2H4g20337 | CX4g034654 | LOC_Os04g08824 | Os04g0171600 | - | Detail |
| C1H4g18038 | 4:3,590,351-3,594,946 | + | C2H4g09503 | CX4g033450 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g07911 | 4:3,604,068-3,604,520 | + | - | - | - | - | - | Detail |
| C1H4g20508 | 4:3,605,693-3,607,000 | - | C2H4g13106 | CX4g031545 | LOC_Os04g09260 | Os04g0172400 | - | Detail |
| C1H4g22697 | 4:3,620,658-3,621,335 | - | C2H4g19448 | CX4g032971 | LOC_Os04g09390 | Os04g0173800 | - | Detail |
| C1H4g22795 | 4:3,634,434-3,635,325 | - | C2H4g16323 | CX4g031393 | LOC_Os09g03190 | Os09g0120033 | - | Detail |
| C1H4g23989 | 4:3,661,405-3,663,925 | - | C2H4g22590 | CX4g034441 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g13047 | 4:3,679,975-3,681,887 | - | C2H4g26043 | CX4g033229 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g12448 | 4:3,685,568-3,686,799 | - | C2H4g09296 | CX4g035209 | LOC_Os04g09520 | - | - | Detail |
| C1H4g29255 | 4:3,715,693-3,719,224 | + | C2H4g00337 | CX4g032438 | - | - | - | Detail |
| C1H4g15809 | 4:3,726,385-3,727,878 | - | C2H4g18023 | CX4g033765 | LOC_Os04g09530 | Os04g0174800 | - | Detail |
| C1H4g04587 | 4:3,739,003-3,742,038 | + | C2H4g07222 | CX4g031895 | LOC_Os04g09540 | Os04g0174900 | - | Detail |
| C1H4g23242 | 4:3,757,126-3,757,566 | + | - | CX4g036518 | LOC_Os04g09570 | Os04g0175400 | - | Detail |
| C1H4g04828 | 4:3,767,701-3,769,020 | - | C2H4g13106 | CX4g034555 | LOC_Os04g09590 | Os04g0175500 | - | Detail |
| C1H4g26996 | 4:3,786,208-3,788,878 | + | C2H4g19878 | CX4g033442 | LOC_Os04g09604 | Os04g0175600 | - | Detail |
| C1H4g27776 | 4:3,810,951-3,817,402 | + | C2H4g01777 | CX4g036641 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g04322 | 4:3,822,889-3,823,776 | + | C2H4g06147 | CX4g031947 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g25500 | 4:3,826,139-3,827,767 | - | C2H4g04542 | CX4g031947 | LOC_Os04g09670 | Os04g0176200 | - | Detail |
| C1H4g17119 | 4:3,830,157-3,830,702 | - | C2H4g04542 | CX4g031947 | LOC_Os04g09680 | Os04g0176200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029010 | 3:4,938,374-4,942,486 | - | C1H3g13621 | C2H3g12127 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| CX3g029900 | 3:4,948,232-4,948,381 | - | - | - | - | - | - | Detail |
| CX3g031089 | 3:4,949,729-4,949,941 | - | - | - | - | - | - | Detail |
| CX3g025706 | 3:4,959,021-4,963,569 | - | C1H3g08320 | C2H3g24955 | LOC_Os03g10850 | Os03g0206201 | - | Detail |
| CX3g025216 | 3:4,977,018-4,979,489 | + | C1H3g23004 | C2H3g30671 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| CX3g028250 | 3:4,980,917-4,983,435 | - | C1H3g06410 | C2H3g08057 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| CX3g028910 | 3:4,985,001-4,986,853 | + | C1H3g27718 | C2H3g20915 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| CX3g026802 | 3:5,006,225-5,007,834 | - | C1H3g00893 | C2H3g10611 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| CX3g025332 | 3:5,008,783-5,010,441 | - | C1H3g01133 | C2H3g21091 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| CX3g026481 | 3:5,011,435-5,015,892 | - | C1H3g28849 | C2H3g16402 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| CX3g029049 | 3:5,017,606-5,019,882 | - | - | - | - | - | - | Detail |
| CX3g026300 | 3:5,024,249-5,025,598 | + | C1H3g06136 | C2H3g22551 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| CX3g028734 | 3:5,030,047-5,032,298 | + | C1H3g30385 | C2H3g27737 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| CX3g029045 | 3:5,035,132-5,038,486 | - | C1H3g09911 | C2H3g03380 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| CX3g026306 | 3:5,040,273-5,043,826 | - | C1H3g06609 | C2H3g00163 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| CX3g026296 | 3:5,058,724-5,060,316 | + | C1H3g30012 | C2H3g10069 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| CX3g026122 | 3:5,062,512-5,065,416 | + | C1H3g13525 | C2H3g05594 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| CX3g030551 | 3:5,067,323-5,070,165 | + | C1H3g23847 | C2H3g02775 | LOC_Os03g11040 | Os03g0208800 | - | Detail |
| CX3g025131 | 3:5,070,995-5,075,212 | - | C1H3g19795 | C2H3g21926 | LOC_Os03g11050 | Os03g0208900 | - | Detail |
| CX3g026202 | 3:5,076,834-5,077,307 | + | C1H3g29509 | C2H3g02600 | LOC_Os03g11060 | Os03g0209000 | - | Detail |