| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g14486 | 4:6,817,175-6,824,716 | - | C2H4g23137 | CX4g035733 | LOC_Os04g14410 | Os04g0221000 | - | Detail |
| C1H4g17568 | 4:6,828,594-6,831,355 | + | C2H4g04277 | - | LOC_Os04g14420 | - | - | Detail |
| C1H4g30087 | 4:6,838,546-6,839,772 | - | C2H4g14084 | CX4g033365 | LOC_Os04g14450 | Os04g0221300 | - | Detail |
| C1H4g30194 | 4:6,840,572-6,841,006 | - | C2H4g14084 | CX4g033365 | LOC_Os04g14130 | Os04g0110500 | - | Detail |
| C1H4g20191 | 4:6,869,806-6,879,558 | - | C2H4g15681 | CX4g036219 | LOC_Os04g14510 | Os04g0221600 | - | Detail |
| C1H4g11172 | 4:6,895,680-6,897,959 | - | C2H4g06170 | CX4g034321 | LOC_Os04g14540 | Os04g0221800 | - | Detail |
| C1H4g05154 | 4:6,922,537-6,923,256 | - | C2H4g16880 | CX4g036574 | LOC_Os04g14560 | Os04g0213800 | - | Detail |
| C1H4g27190 | 4:6,923,883-6,927,454 | - | C2H4g04514 | CX4g031595 | LOC_Os04g14570 | Os04g0226800 | - | Detail |
| C1H4g09121 | 4:6,969,066-6,985,444 | - | C2H4g15426 | CX4g033711 | LOC_Os04g14654 | Os04g0223000 | - | Detail |
| C1H4g19080 | 4:6,991,499-6,993,901 | - | C2H4g19689 | CX4g031538 | LOC_Os04g14680 | Os04g0223300 | - | Detail |
| C1H4g25173 | 4:6,996,751-7,002,926 | - | C2H4g12058 | CX4g031401 | LOC_Os04g14690 | Os04g0223500 | - | Detail |
| C1H4g16118 | 4:7,022,336-7,027,659 | - | C2H4g10349 | CX4g035150 | LOC_Os04g14690 | Os04g0223901 | - | Detail |
| C1H4g31119 | 4:7,036,081-7,045,942 | - | C2H4g13050 | CX4g032607 | LOC_Os11g41400 | - | - | Detail |
| C1H4g31787 | 4:7,056,287-7,059,770 | - | C2H4g13102 | - | - | - | - | Detail |
| C1H4g10957 | 4:7,064,606-7,069,418 | - | C2H4g12943 | CX4g031570 | LOC_Os04g14760 | Os04g0224600 | - | Detail |
| C1H4g03285 | 4:7,083,915-7,090,863 | - | C2H4g19938 | CX4g035046 | LOC_Os04g14790 | Os04g0224900 | - | Detail |
| C1H4g03083 | 4:7,097,287-7,097,922 | - | C2H4g08415 | CX4g031444 | LOC_Os04g14810 | Os04g0225100 | - | Detail |
| C1H4g26221 | 4:7,124,370-7,126,064 | - | C2H4g08150 | CX4g034584 | LOC_Os04g14840 | Os04g0103500 | SDRLK-21 | Detail |
| C1H4g22740 | 4:7,182,049-7,184,011 | + | C2H4g25571 | CX4g032785 | LOC_Os04g14990 | Os04g0225700 | - | Detail |
| C1H4g21527 | 4:7,197,540-7,199,741 | + | C2H4g26908 | CX4g032287 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025008 | 3:4,740,003-4,742,719 | + | C1H3g08866 | C2H3g27684 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| CX3g027908 | 3:4,743,345-4,750,659 | - | C1H3g22443 | C2H3g07444 | LOC_Os03g10469 | Os03g0201901 | - | Detail |
| CX3g028036 | 3:4,756,361-4,759,942 | - | C1H3g14443 | C2H3g09161 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| CX3g026152 | 3:4,762,351-4,765,549 | - | C1H3g22113 | C2H3g24025 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| CX3g030169 | 3:4,766,686-4,770,652 | - | C1H3g27837 | C2H3g13194 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| CX3g025689 | 3:4,772,375-4,775,132 | - | C1H3g27666 | C2H3g17561 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| CX3g029844 | 3:4,775,363-4,784,510 | + | C1H3g27625 | C2H3g21513 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| CX3g027943 | 3:4,797,476-4,798,523 | + | C1H3g03653 | C2H3g08169 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| CX3g027605 | 3:4,809,027-4,815,254 | + | C1H3g22146 | C2H3g27974 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| CX3g028482 | 3:4,817,646-4,819,123 | - | C1H3g29891 | C2H3g08201 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| CX3g026677 | 3:4,838,478-4,842,417 | + | C1H3g06442 | C2H3g30001 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| CX3g029117 | 3:4,846,363-4,847,552 | + | C1H3g30369 | C2H3g23547 | LOC_Os03g10730 | - | - | Detail |
| CX3g030767 | 3:4,866,248-4,868,287 | + | C1H3g16112 | C2H3g07827 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| CX3g025287 | 3:4,872,132-4,872,544 | - | - | C2H3g08469 | - | - | - | Detail |
| CX3g028803 | 3:4,876,103-4,881,621 | - | C1H3g13244 | C2H3g17885 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| CX3g030429 | 3:4,888,732-4,890,152 | - | C1H3g10116 | C2H3g22270 | LOC_Os03g10770 | Os03g0205300 | - | Detail |
| CX3g028760 | 3:4,898,012-4,905,844 | + | C1H3g09266 | C2H3g01278 | LOC_Os03g10780 | Os03g0205400 | - | Detail |
| CX3g029451 | 3:4,906,864-4,911,525 | + | C1H3g14529 | C2H3g28949 | LOC_Os03g10790 | Os03g0205500 | - | Detail |
| CX3g026705 | 3:4,921,739-4,924,563 | + | C1H3g24511 | C2H3g29987 | LOC_Os03g10800 | Os03g0205700 | - | Detail |
| CX3g029670 | 3:4,929,923-4,931,389 | - | C1H3g03568 | C2H3g05398 | LOC_Os03g10810 | Os03g0205800 | HHC3 | Detail |