| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g18380 | 9:8,057,502-8,060,575 | - | C2H9g08782 | CX9g055535 | LOC_Os09g15835 | Os09g0327550 | - | Detail |
| C1H9g22823 | 9:8,061,010-8,066,928 | - | C2H9g22970 | CX9g056706 | LOC_Os09g15840 | Os09g0327575 | - | Detail |
| C1H9g16572 | 9:8,098,132-8,104,148 | + | C2H9g21646 | CX9g057803 | LOC_Os09g15850 | Os09g0327800 | - | Detail |
| C1H9g05046 | 9:8,146,202-8,149,192 | - | - | - | - | Os09g0499600 | - | Detail |
| C1H9g14023 | 9:8,150,684-8,153,300 | + | - | - | - | Os09g0499600 | - | Detail |
| C1H9g19473 | 9:8,184,796-8,187,981 | - | C2H9g21003 | CX9g055579 | LOC_Os09g16030 | Os09g0329200 | - | Detail |
| C1H9g06647 | 9:8,198,272-8,199,771 | - | C2H9g08394 | CX9g058128 | LOC_Os09g16090 | Os09g0330000 | - | Detail |
| C1H9g29313 | 9:8,220,457-8,225,172 | + | C2H9g03814 | CX9g056743 | LOC_Os09g16160 | Os09g0330700 | - | Detail |
| C1H9g02563 | 9:8,290,079-8,295,787 | - | C2H9g23346 | CX9g054859 | LOC_Os09g16240 | Os09g0331600 | - | Detail |
| C1H9g03673 | 9:8,302,226-8,304,763 | - | C2H9g04185 | CX9g057842 | LOC_Os09g16260 | Os09g0331900 | - | Detail |
| C1H9g17604 | 9:8,348,561-8,362,522 | - | C2H9g13411 | CX9g056847 | LOC_Os09g16290 | Os09g0332300 | - | Detail |
| C1H9g10386 | 9:8,377,366-8,386,077 | - | C2H9g07195 | CX9g056847 | LOC_Os09g16330 | Os09g0332700 | OsPDR20 | Detail |
| C1H9g07727 | 9:8,398,361-8,399,020 | - | C2H9g12206 | - | - | - | - | Detail |
| C1H9g19524 | 9:8,399,846-8,403,027 | - | C2H9g07195 | CX9g056847 | LOC_Os09g16380 | Os09g0333000 | - | Detail |
| C1H9g23953 | 9:8,405,061-8,408,256 | - | C2H9g07195 | CX9g056847 | LOC_Os09g16380 | Os09g0333000 | - | Detail |
| C1H9g18371 | 9:8,424,183-8,428,449 | - | C2H9g25636 | - | - | - | - | Detail |
| C1H9g26841 | 9:8,459,520-8,462,016 | - | C2H9g00499 | CX9g056750 | LOC_Os09g16449 | Os09g0333500 | OsPDR18, ABCG52 | Detail |
| C1H9g13383 | 9:8,462,852-8,465,401 | - | C2H9g29450 | CX9g056750 | LOC_Os09g16458 | Os09g0332700 | OsPDR20 | Detail |
| C1H9g24525 | 9:8,482,736-8,483,104 | - | C2H9g12973 | CX9g056847 | LOC_Os09g16458 | Os09g0333600 | - | Detail |
| C1H9g09036 | 9:8,521,461-8,523,604 | + | C2H9g25170 | CX9g056065 | LOC_Os09g16510 | Os09g0334500 | WRKY74, OsWRKY74 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025008 | 3:4,740,003-4,742,719 | + | C1H3g08866 | C2H3g27684 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| CX3g027908 | 3:4,743,345-4,750,659 | - | C1H3g22443 | C2H3g07444 | LOC_Os03g10469 | Os03g0201901 | - | Detail |
| CX3g028036 | 3:4,756,361-4,759,942 | - | C1H3g14443 | C2H3g09161 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| CX3g026152 | 3:4,762,351-4,765,549 | - | C1H3g22113 | C2H3g24025 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| CX3g030169 | 3:4,766,686-4,770,652 | - | C1H3g27837 | C2H3g13194 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| CX3g025689 | 3:4,772,375-4,775,132 | - | C1H3g27666 | C2H3g17561 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| CX3g029844 | 3:4,775,363-4,784,510 | + | C1H3g27625 | C2H3g21513 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| CX3g027943 | 3:4,797,476-4,798,523 | + | C1H3g03653 | C2H3g08169 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| CX3g027605 | 3:4,809,027-4,815,254 | + | C1H3g22146 | C2H3g27974 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| CX3g028482 | 3:4,817,646-4,819,123 | - | C1H3g29891 | C2H3g08201 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| CX3g026677 | 3:4,838,478-4,842,417 | + | C1H3g06442 | C2H3g30001 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| CX3g029117 | 3:4,846,363-4,847,552 | + | C1H3g30369 | C2H3g23547 | LOC_Os03g10730 | - | - | Detail |
| CX3g030767 | 3:4,866,248-4,868,287 | + | C1H3g16112 | C2H3g07827 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| CX3g025287 | 3:4,872,132-4,872,544 | - | - | C2H3g08469 | - | - | - | Detail |
| CX3g028803 | 3:4,876,103-4,881,621 | - | C1H3g13244 | C2H3g17885 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| CX3g030429 | 3:4,888,732-4,890,152 | - | C1H3g10116 | C2H3g22270 | LOC_Os03g10770 | Os03g0205300 | - | Detail |
| CX3g028760 | 3:4,898,012-4,905,844 | + | C1H3g09266 | C2H3g01278 | LOC_Os03g10780 | Os03g0205400 | - | Detail |
| CX3g029451 | 3:4,906,864-4,911,525 | + | C1H3g14529 | C2H3g28949 | LOC_Os03g10790 | Os03g0205500 | - | Detail |
| CX3g026705 | 3:4,921,739-4,924,563 | + | C1H3g24511 | C2H3g29987 | LOC_Os03g10800 | Os03g0205700 | - | Detail |
| CX3g029670 | 3:4,929,923-4,931,389 | - | C1H3g03568 | C2H3g05398 | LOC_Os03g10810 | Os03g0205800 | HHC3 | Detail |