| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g18553 | 3:23,007,832-23,010,545 | + | C1H3g23863 | CX3g025383 | LOC_Os03g44300 | Os03g0645100 | - | Detail |
| C2H3g29997 | 3:23,010,960-23,016,176 | - | C1H3g29402 | CX3g028384 | LOC_Os03g44310 | Os03g0645200 | - | Detail |
| C2H3g05207 | 3:23,058,639-23,064,268 | - | - | - | - | - | - | Detail |
| C2H3g11048 | 3:23,115,210-23,119,455 | + | C1H3g02767 | CX3g027204 | LOC_Os03g44420 | Os03g0646100 | - | Detail |
| C2H3g26038 | 3:23,120,545-23,121,900 | - | C1H3g18608 | CX3g026220 | LOC_Os03g44430 | Os03g0646200 | - | Detail |
| C2H3g09160 | 3:23,122,399-23,125,766 | + | C1H3g15306 | CX3g030130 | LOC_Os03g44440 | Os03g0646300 | OsCNGC4 | Detail |
| C2H3g09347 | 3:23,128,849-23,129,634 | - | C1H3g01932 | CX3g029288 | LOC_Os03g44450 | Os03g0646400 | - | Detail |
| C2H3g17378 | 3:23,133,955-23,142,457 | + | C1H3g04677 | CX3g025480 | LOC_Os03g44484 | Os03g0646800 | - | Detail |
| C2H3g09600 | 3:23,142,817-23,151,758 | - | C1H3g15319 | CX3g030610 | LOC_Os03g44500 | Os03g0646900 | OsPPKL1, GL3.1 | Detail |
| C2H3g20933 | 3:23,168,070-23,171,467 | - | C1H3g31672 | CX3g028021 | LOC_Os03g44530 | Os03g0647500 | - | Detail |
| C2H3g08581 | 3:23,174,388-23,179,714 | - | C1H3g00783 | CX3g025465 | LOC_Os03g44540 | Os03g0647600 | OsNF-YA3, HAP2H | Detail |
| C2H3g28034 | 3:23,195,482-23,199,190 | - | C1H3g28506 | CX3g026616 | LOC_Os03g44560 | Os03g0647800 | - | Detail |
| C2H3g20748 | 3:23,213,648-23,220,005 | - | C1H3g04139 | CX3g026899 | LOC_Os03g44610 | Os03g0648300 | - | Detail |
| C2H3g20479 | 3:23,224,903-23,228,653 | + | C1H3g01950 | CX3g030255 | LOC_Os03g44620 | Os03g0648400 | - | Detail |
| C2H3g07590 | 3:23,228,841-23,229,386 | - | C1H3g13484 | CX3g030166 | LOC_Os03g44630 | Os03g0648500 | - | Detail |
| C2H3g10057 | 3:23,238,085-23,239,086 | - | C1H3g13830 | CX3g029294 | LOC_Os03g44650 | Os03g0648800 | - | Detail |
| C2H3g02590 | 3:23,241,528-23,245,187 | + | C1H3g12327 | CX3g030053 | LOC_Os03g44660 | Os03g0648900 | - | Detail |
| C2H3g08448 | 3:23,246,672-23,250,208 | - | C1H3g07360 | CX3g030188 | LOC_Os03g44670 | Os03g0649000 | - | Detail |
| C2H3g18182 | 3:23,271,386-23,272,083 | + | C1H3g11970 | CX3g028790 | - | - | - | Detail |
| C2H3g11794 | 3:23,297,378-23,307,223 | + | C1H3g00053 | CX3g029987 | LOC_Os03g44710 | Os03g0650000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030929 | 3:4,605,437-4,606,410 | - | C1H3g04729 | C2H3g24222 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| CX3g028200 | 3:4,609,071-4,609,220 | + | - | - | - | - | - | Detail |
| CX3g026871 | 3:4,613,994-4,614,455 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g026889 | 3:4,627,875-4,629,870 | - | C1H3g23090 | C2H3g16295 | LOC_Os03g10220 | - | - | Detail |
| CX3g026154 | 3:4,630,812-4,633,715 | - | C1H3g13438 | C2H3g19804 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| CX3g028745 | 3:4,633,901-4,638,275 | + | C1H3g16749 | C2H3g09522 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| CX3g029096 | 3:4,643,197-4,644,372 | + | C1H3g12272 | C2H3g01585 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| CX3g031305 | 3:4,654,085-4,655,018 | - | C1H3g00274 | C2H3g23420 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| CX3g025392 | 3:4,671,843-4,673,085 | + | C1H3g07008 | C2H3g26891 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| CX3g029912 | 3:4,680,964-4,682,725 | + | C1H3g12286 | C2H3g01636 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| CX3g028962 | 3:4,688,899-4,689,504 | + | C1H3g29696 | C2H3g23926 | - | - | - | Detail |
| CX3g025427 | 3:4,690,738-4,692,702 | + | C1H3g13020 | C2H3g07176 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| CX3g027963 | 3:4,693,450-4,696,543 | - | C1H3g29298 | C2H3g17766 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| CX3g025362 | 3:4,701,236-4,703,268 | - | C1H3g01933 | C2H3g08890 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| CX3g031231 | 3:4,704,440-4,706,740 | - | C1H3g30301 | C2H3g09465 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| CX3g028366 | 3:4,710,479-4,712,645 | + | C1H3g28372 | C2H3g19650 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| CX3g026809 | 3:4,713,968-4,717,290 | - | C1H3g07769 | C2H3g21201 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| CX3g027641 | 3:4,720,018-4,722,399 | + | C1H3g26783 | C2H3g27980 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| CX3g026129 | 3:4,734,155-4,735,969 | + | C1H3g14289 | C2H3g05108 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| CX3g029780 | 3:4,736,952-4,739,174 | - | C1H3g07517 | C2H3g04674 | LOC_Os03g10450 | Os03g0201600 | - | Detail |