| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19430 | 3:15,080,469-15,086,406 | + | C1H3g22073 | CX3g028877 | LOC_Os03g29180 | Os03g0405100 | - | Detail |
| C2H3g25754 | 3:15,091,238-15,096,992 | + | C1H3g16781 | CX3g028390 | LOC_Os03g29190 | Os03g0405500 | - | Detail |
| C2H3g20515 | 3:15,099,338-15,100,540 | + | C1H3g17133 | - | - | Os03g0405550 | - | Detail |
| C2H3g04139 | 3:15,114,141-15,117,818 | + | C1H3g04698 | CX3g029381 | LOC_Os03g29240 | Os03g0405900 | RRA3 | Detail |
| C2H3g28132 | 3:15,137,826-15,138,670 | + | C1H3g28025 | CX3g028079 | LOC_Os03g29250 | Os03g0406100 | OsSPX5 | Detail |
| C2H3g00155 | 3:15,148,759-15,152,299 | + | C1H3g14233 | CX3g025201 | LOC_Os03g29260 | Os03g0406200 | - | Detail |
| C2H3g23059 | 3:15,193,603-15,197,174 | + | C1H3g31034 | CX3g026877 | LOC_Os03g29340 | Os03g0406900 | OsMac4 | Detail |
| C2H3g26359 | 3:15,196,504-15,204,812 | - | C1H3g30818 | CX3g030450 | LOC_Os03g29350 | Os03g0407000 | - | Detail |
| C2H3g18043 | 3:15,227,805-15,230,360 | - | - | CX3g026274 | - | Os03g0407400 | GS3 | Detail |
| C2H3g08674 | 3:15,232,845-15,233,328 | - | C1H3g12617 | CX3g026274 | - | Os03g0407400 | GS3 | Detail |
| C2H3g00647 | 3:15,246,449-15,249,794 | - | C1H3g17471 | CX3g025160 | LOC_Os03g29410 | Os03g0407900 | - | Detail |
| C2H3g15951 | 3:15,286,336-15,290,992 | + | C1H3g10731 | CX3g027064 | LOC_Os03g29470 | Os03g0408500 | - | Detail |
| C2H3g04400 | 3:15,340,333-15,344,377 | - | C1H3g31871 | CX3g026777 | LOC_Os03g29570 | Os03g0409400 | - | Detail |
| C2H3g25735 | 3:15,345,030-15,347,893 | + | C1H3g21807 | CX3g031255 | LOC_Os03g29584 | - | - | Detail |
| C2H3g24065 | 3:15,365,947-15,369,263 | + | C1H3g12159 | CX3g031178 | LOC_Os03g29630 | Os03g0410100 | - | Detail |
| C2H3g24471 | 3:15,380,312-15,380,656 | - | C1H3g17148 | CX3g026992 | LOC_Os03g29680 | Os03g0410300 | - | Detail |
| C2H3g16726 | 3:15,394,716-15,397,705 | - | C1H3g03774 | CX3g028649 | LOC_Os03g29730 | Os03g0410700 | - | Detail |
| C2H3g26637 | 3:15,397,956-15,400,076 | + | C1H3g16818 | CX3g029764 | LOC_Os03g29740 | Os03g0410900 | - | Detail |
| C2H3g25819 | 3:15,406,691-15,412,809 | + | C1H3g23163 | CX3g026328 | LOC_Os03g29750 | Os03g0411000 | - | Detail |
| C2H3g03408 | 3:15,423,646-15,429,128 | + | C1H3g09595 | CX3g029428 | LOC_Os03g29760 | Os03g0411100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030929 | 3:4,605,437-4,606,410 | - | C1H3g04729 | C2H3g24222 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| CX3g028200 | 3:4,609,071-4,609,220 | + | - | - | - | - | - | Detail |
| CX3g026871 | 3:4,613,994-4,614,455 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g026889 | 3:4,627,875-4,629,870 | - | C1H3g23090 | C2H3g16295 | LOC_Os03g10220 | - | - | Detail |
| CX3g026154 | 3:4,630,812-4,633,715 | - | C1H3g13438 | C2H3g19804 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| CX3g028745 | 3:4,633,901-4,638,275 | + | C1H3g16749 | C2H3g09522 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| CX3g029096 | 3:4,643,197-4,644,372 | + | C1H3g12272 | C2H3g01585 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| CX3g031305 | 3:4,654,085-4,655,018 | - | C1H3g00274 | C2H3g23420 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| CX3g025392 | 3:4,671,843-4,673,085 | + | C1H3g07008 | C2H3g26891 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| CX3g029912 | 3:4,680,964-4,682,725 | + | C1H3g12286 | C2H3g01636 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| CX3g028962 | 3:4,688,899-4,689,504 | + | C1H3g29696 | C2H3g23926 | - | - | - | Detail |
| CX3g025427 | 3:4,690,738-4,692,702 | + | C1H3g13020 | C2H3g07176 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| CX3g027963 | 3:4,693,450-4,696,543 | - | C1H3g29298 | C2H3g17766 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| CX3g025362 | 3:4,701,236-4,703,268 | - | C1H3g01933 | C2H3g08890 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| CX3g031231 | 3:4,704,440-4,706,740 | - | C1H3g30301 | C2H3g09465 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| CX3g028366 | 3:4,710,479-4,712,645 | + | C1H3g28372 | C2H3g19650 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| CX3g026809 | 3:4,713,968-4,717,290 | - | C1H3g07769 | C2H3g21201 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| CX3g027641 | 3:4,720,018-4,722,399 | + | C1H3g26783 | C2H3g27980 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| CX3g026129 | 3:4,734,155-4,735,969 | + | C1H3g14289 | C2H3g05108 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| CX3g029780 | 3:4,736,952-4,739,174 | - | C1H3g07517 | C2H3g04674 | LOC_Os03g10450 | Os03g0201600 | - | Detail |