| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g25973 | 7:3,480,924-3,483,128 | - | C1H7g26848 | CX7g047710 | LOC_Os07g07470 | Os07g0170100 | - | Detail |
| C2H7g06992 | 7:3,483,249-3,484,496 | - | C1H7g14072 | CX7g047710 | LOC_Os07g07470 | Os07g0170100 | - | Detail |
| C2H7g22441 | 7:3,486,329-3,488,048 | + | C1H7g03028 | CX7g050139 | LOC_Os07g07480 | Os07g0170200 | - | Detail |
| C2H7g19147 | 7:3,488,356-3,492,988 | - | C1H7g23823 | CX7g047632 | LOC_Os07g07490 | Os07g0170300 | YTH10 | Detail |
| C2H7g13685 | 7:3,495,963-3,496,905 | - | C1H7g11614 | CX7g048057 | LOC_Os07g07500 | Os07g0170500 | - | Detail |
| C2H7g26640 | 7:3,505,767-3,510,132 | + | C1H7g24798 | CX7g049154 | LOC_Os07g07520 | Os07g0170800 | - | Detail |
| C2H7g19751 | 7:3,522,150-3,523,718 | + | C1H7g24634 | CX7g046745 | LOC_Os07g07540 | Os07g0171100 | OsXb22a | Detail |
| C2H7g02309 | 7:3,524,688-3,528,652 | - | C1H7g06195 | CX7g048847 | LOC_Os07g07550 | Os07g0171200 | - | Detail |
| C2H7g29706 | 7:3,533,964-3,540,440 | + | C1H7g31145 | CX7g049998 | LOC_Os07g07560 | Os07g0171300 | - | Detail |
| C2H7g14506 | 7:3,552,017-3,555,441 | + | C1H7g26306 | CX7g047532 | LOC_Os07g07580 | Os07g0172200 | - | Detail |
| C2H7g26589 | 7:3,562,358-3,565,482 | - | C1H7g14038 | CX7g046091 | LOC_Os07g07610 | Os07g0172500 | - | Detail |
| C2H7g16081 | 7:3,566,331-3,568,934 | - | C1H7g15384 | CX7g047681 | LOC_Os07g07620 | Os07g0172600 | OsSLA4 | Detail |
| C2H7g12745 | 7:3,570,911-3,571,925 | - | C1H7g23957 | CX7g048440 | LOC_Os07g07630 | - | - | Detail |
| C2H7g07270 | 7:3,580,707-3,582,788 | + | C1H7g10408 | CX7g047050 | LOC_Os07g07646 | Os03g0795100 | - | Detail |
| C2H7g02138 | 7:3,583,677-3,589,354 | + | C1H7g05797 | CX7g046232 | LOC_Os07g07654 | Os07g0172900 | - | Detail |
| C2H7g07514 | 7:3,592,902-3,593,423 | + | - | CX7g049942 | LOC_Os07g07670 | Os07g0173100 | - | Detail |
| C2H7g04561 | 7:3,596,114-3,599,418 | - | C1H7g02387 | CX7g047731 | LOC_Os07g07680 | Os07g0173200 | - | Detail |
| C2H7g15810 | 7:3,600,676-3,600,996 | - | - | CX7g048220 | - | - | - | Detail |
| C2H7g24659 | 7:3,612,731-3,620,726 | + | C1H7g28770 | CX7g049326 | LOC_Os07g07690 | Os07g0173300 | qCTB7 | Detail |
| C2H7g08656 | 7:3,621,453-3,623,676 | + | C1H7g17950 | CX7g047641 | LOC_Os07g07709 | Os07g0173501 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030929 | 3:4,605,437-4,606,410 | - | C1H3g04729 | C2H3g24222 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| CX3g028200 | 3:4,609,071-4,609,220 | + | - | - | - | - | - | Detail |
| CX3g026871 | 3:4,613,994-4,614,455 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g026889 | 3:4,627,875-4,629,870 | - | C1H3g23090 | C2H3g16295 | LOC_Os03g10220 | - | - | Detail |
| CX3g026154 | 3:4,630,812-4,633,715 | - | C1H3g13438 | C2H3g19804 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| CX3g028745 | 3:4,633,901-4,638,275 | + | C1H3g16749 | C2H3g09522 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| CX3g029096 | 3:4,643,197-4,644,372 | + | C1H3g12272 | C2H3g01585 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| CX3g031305 | 3:4,654,085-4,655,018 | - | C1H3g00274 | C2H3g23420 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| CX3g025392 | 3:4,671,843-4,673,085 | + | C1H3g07008 | C2H3g26891 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| CX3g029912 | 3:4,680,964-4,682,725 | + | C1H3g12286 | C2H3g01636 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| CX3g028962 | 3:4,688,899-4,689,504 | + | C1H3g29696 | C2H3g23926 | - | - | - | Detail |
| CX3g025427 | 3:4,690,738-4,692,702 | + | C1H3g13020 | C2H3g07176 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| CX3g027963 | 3:4,693,450-4,696,543 | - | C1H3g29298 | C2H3g17766 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| CX3g025362 | 3:4,701,236-4,703,268 | - | C1H3g01933 | C2H3g08890 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| CX3g031231 | 3:4,704,440-4,706,740 | - | C1H3g30301 | C2H3g09465 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| CX3g028366 | 3:4,710,479-4,712,645 | + | C1H3g28372 | C2H3g19650 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| CX3g026809 | 3:4,713,968-4,717,290 | - | C1H3g07769 | C2H3g21201 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| CX3g027641 | 3:4,720,018-4,722,399 | + | C1H3g26783 | C2H3g27980 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| CX3g026129 | 3:4,734,155-4,735,969 | + | C1H3g14289 | C2H3g05108 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| CX3g029780 | 3:4,736,952-4,739,174 | - | C1H3g07517 | C2H3g04674 | LOC_Os03g10450 | Os03g0201600 | - | Detail |