| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16199 | 3:8,341,674-8,344,532 | + | C2H3g17017 | CX3g030195 | LOC_Os03g17030 | Os03g0278500 | - | Detail |
| C1H3g31491 | 3:8,357,161-8,365,901 | + | C2H3g02257 | CX3g025742 | LOC_Os03g17050 | Os03g0278700 | - | Detail |
| C1H3g01943 | 3:8,366,949-8,368,202 | - | C2H3g24586 | CX3g027653 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g21484 | 3:8,369,148-8,369,780 | - | C2H3g27921 | CX3g028557 | LOC_Os03g17070 | Os03g0278900 | - | Detail |
| C1H3g21261 | 3:8,370,220-8,373,510 | + | C2H3g12181 | CX3g025758 | LOC_Os03g17060 | Os03g0278800 | - | Detail |
| C1H3g00735 | 3:8,375,657-8,376,243 | - | C2H3g30418 | CX3g029719 | LOC_Os03g17100 | Os03g0279200 | - | Detail |
| C1H3g01283 | 3:8,383,424-8,387,617 | - | C2H3g16393 | CX3g031018 | LOC_Os03g17120 | Os03g0279400 | - | Detail |
| C1H3g17646 | 3:8,390,064-8,396,765 | - | C2H3g23941 | CX3g028159 | LOC_Os03g17140 | Os03g0279600 | - | Detail |
| C1H3g15850 | 3:8,400,796-8,401,284 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g07795 | 3:8,413,338-8,414,465 | - | - | - | - | - | - | Detail |
| C1H3g07955 | 3:8,417,490-8,418,065 | - | C2H3g05642 | CX3g030469 | LOC_Os03g17150 | Os03g0279700 | - | Detail |
| C1H3g15555 | 3:8,429,441-8,430,100 | + | C2H3g27940 | - | - | - | - | Detail |
| C1H3g10805 | 3:8,431,138-8,437,522 | + | C2H3g08725 | CX3g028650 | LOC_Os03g17164 | Os03g0279816 | - | Detail |
| C1H3g09044 | 3:8,441,135-8,442,775 | + | C2H3g11175 | - | LOC_Os03g17170 | Os03g0279900 | - | Detail |
| C1H3g24073 | 3:8,443,404-8,445,164 | + | C2H3g19320 | - | LOC_Os03g17174 | Os03g0279950 | - | Detail |
| C1H3g05773 | 3:8,445,474-8,454,429 | - | C2H3g05359 | CX3g030780 | LOC_Os03g17180 | Os03g0280000 | - | Detail |
| C1H3g27832 | 3:8,463,341-8,464,136 | + | C2H3g01051 | - | LOC_Os03g17200 | Os03g0280400 | - | Detail |
| C1H3g22706 | 3:8,481,535-8,488,032 | + | C2H3g27265 | CX3g028994 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| C1H3g01230 | 3:8,489,776-8,490,735 | + | C2H3g20835 | CX3g029125 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| C1H3g29688 | 3:8,491,236-8,493,768 | - | C2H3g25701 | CX3g025025 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g030929 | 3:4,605,437-4,606,410 | - | C1H3g04729 | C2H3g24222 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| CX3g028200 | 3:4,609,071-4,609,220 | + | - | - | - | - | - | Detail |
| CX3g026871 | 3:4,613,994-4,614,455 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g026889 | 3:4,627,875-4,629,870 | - | C1H3g23090 | C2H3g16295 | LOC_Os03g10220 | - | - | Detail |
| CX3g026154 | 3:4,630,812-4,633,715 | - | C1H3g13438 | C2H3g19804 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| CX3g028745 | 3:4,633,901-4,638,275 | + | C1H3g16749 | C2H3g09522 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| CX3g029096 | 3:4,643,197-4,644,372 | + | C1H3g12272 | C2H3g01585 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| CX3g031305 | 3:4,654,085-4,655,018 | - | C1H3g00274 | C2H3g23420 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| CX3g025392 | 3:4,671,843-4,673,085 | + | C1H3g07008 | C2H3g26891 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| CX3g029912 | 3:4,680,964-4,682,725 | + | C1H3g12286 | C2H3g01636 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| CX3g028962 | 3:4,688,899-4,689,504 | + | C1H3g29696 | C2H3g23926 | - | - | - | Detail |
| CX3g025427 | 3:4,690,738-4,692,702 | + | C1H3g13020 | C2H3g07176 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| CX3g027963 | 3:4,693,450-4,696,543 | - | C1H3g29298 | C2H3g17766 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| CX3g025362 | 3:4,701,236-4,703,268 | - | C1H3g01933 | C2H3g08890 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| CX3g031231 | 3:4,704,440-4,706,740 | - | C1H3g30301 | C2H3g09465 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| CX3g028366 | 3:4,710,479-4,712,645 | + | C1H3g28372 | C2H3g19650 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| CX3g026809 | 3:4,713,968-4,717,290 | - | C1H3g07769 | C2H3g21201 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| CX3g027641 | 3:4,720,018-4,722,399 | + | C1H3g26783 | C2H3g27980 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| CX3g026129 | 3:4,734,155-4,735,969 | + | C1H3g14289 | C2H3g05108 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| CX3g029780 | 3:4,736,952-4,739,174 | - | C1H3g07517 | C2H3g04674 | LOC_Os03g10450 | Os03g0201600 | - | Detail |