| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02251 | 4:29,440,701-29,440,994 | + | C2H4g07923 | CX4g035528 | LOC_Os04g56610 | - | - | Detail |
| C1H4g07215 | 4:29,444,839-29,449,014 | + | C2H4g09519 | CX4g032531 | LOC_Os04g56620 | Os04g0661600 | OsCNX1 | Detail |
| C1H4g05764 | 4:29,449,074-29,456,814 | - | C2H4g30358 | CX4g035527 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| C1H4g15510 | 4:29,458,517-29,459,700 | - | C2H4g15418 | CX4g036335 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| C1H4g17837 | 4:29,461,361-29,465,005 | + | C2H4g25643 | CX4g035742 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| C1H4g07157 | 4:29,465,879-29,467,585 | + | C2H4g06604 | CX4g035185 | LOC_Os04g56654 | - | - | Detail |
| C1H4g06952 | 4:29,468,052-29,469,832 | - | C2H4g27865 | CX4g035521 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| C1H4g20842 | 4:29,492,711-29,495,836 | - | C2H4g27508 | CX4g032460 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| C1H4g09059 | 4:29,497,177-29,501,717 | - | C2H4g17303 | CX4g034138 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| C1H4g13098 | 4:29,503,747-29,509,876 | + | C2H4g16716 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C1H4g29894 | 4:29,510,592-29,512,553 | - | C2H4g14267 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C1H4g08308 | 4:29,529,386-29,535,319 | + | C2H4g26679 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C1H4g00285 | 4:29,538,771-29,544,273 | - | C2H4g19453 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C1H4g10605 | 4:29,546,843-29,547,097 | + | C2H4g23478 | CX4g034501 | - | - | - | Detail |
| C1H4g18316 | 4:29,547,148-29,550,525 | + | C2H4g29870 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C1H4g08413 | 4:29,551,368-29,552,386 | - | C2H4g27682 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C1H4g06808 | 4:29,560,529-29,567,508 | - | C2H4g25028 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C1H4g18422 | 4:29,575,958-29,581,942 | - | C2H4g20102 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C1H4g28826 | 4:29,615,096-29,617,428 | - | C2H4g12473 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C1H4g05011 | 4:29,618,216-29,620,579 | - | C2H4g26922 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029059 | 3:4,154,154-4,161,517 | - | C1H3g14873 | C2H3g07809 | LOC_Os03g09100 | Os03g0191000 | SCT1 | Detail |
| CX3g025401 | 3:4,165,455-4,168,252 | - | C1H3g14873 | C2H3g15678 | LOC_Os03g09110 | Os03g0191100 | - | Detail |
| CX3g026471 | 3:4,174,305-4,175,286 | - | C1H3g14671 | C2H3g21550 | LOC_Os03g09120 | Os03g0191200 | - | Detail |
| CX3g028388 | 3:4,186,815-4,189,163 | + | C1H3g14495 | C2H3g28466 | LOC_Os03g09140 | Os03g0191400 | OsRab6B2, OsRab6a | Detail |
| CX3g027338 | 3:4,191,877-4,195,751 | - | C1H3g25069 | C2H3g00905 | LOC_Os03g09150 | Os03g0191700 | - | Detail |
| CX3g029377 | 3:4,198,065-4,198,883 | + | C1H3g30469 | C2H3g19135 | LOC_Os03g09160 | Os03g0191800 | - | Detail |
| CX3g028606 | 3:4,204,913-4,205,803 | - | C1H3g18769 | C2H3g16037 | LOC_Os03g09170 | Os03g0191900 | - | Detail |
| CX3g025223 | 3:4,210,539-4,213,745 | - | C1H3g13867 | C2H3g14345 | LOC_Os03g09180 | Os03g0192000 | - | Detail |
| CX3g026535 | 3:4,214,259-4,216,382 | + | C1H3g13109 | C2H3g00220 | LOC_Os03g09190 | Os03g0192100 | - | Detail |
| CX3g029681 | 3:4,217,108-4,220,022 | - | C1H3g24183 | C2H3g04064 | LOC_Os03g09200 | Os03g0192300 | - | Detail |
| CX3g026243 | 3:4,232,013-4,234,275 | - | C1H3g22125 | C2H3g23777 | LOC_Os03g09210 | Os03g0192400 | - | Detail |
| CX3g025389 | 3:4,239,360-4,244,356 | + | C1H3g21423 | C2H3g14962 | LOC_Os03g09220 | Os03g0192500 | PP45, OsPP45, BIPP2C1 | Detail |
| CX3g029005 | 3:4,245,050-4,246,335 | - | C1H3g29007 | C2H3g01547 | LOC_Os03g09230 | Os03g0192600 | - | Detail |
| CX3g028884 | 3:4,249,607-4,253,382 | - | C1H3g26414 | C2H3g00630 | LOC_Os03g09250 | Os03g0192700 | INO1, RINO1 | Detail |
| CX3g027446 | 3:4,263,865-4,270,941 | + | C1H3g18179 | C2H3g01275 | LOC_Os03g09260 | Os03g0192900 | - | Detail |
| CX3g025926 | 3:4,278,228-4,279,760 | + | C1H3g11049 | C2H3g19711 | LOC_Os03g09280 | Os03g0193000 | - | Detail |
| CX3g025810 | 3:4,282,308-4,284,485 | + | C1H3g04153 | C2H3g11800 | LOC_Os03g09290 | Os03g0193075 | - | Detail |
| CX3g028060 | 3:4,285,272-4,287,484 | + | C1H3g25160 | C2H3g07804 | LOC_Os03g09300 | Os03g0191700 | - | Detail |
| CX3g027000 | 3:4,289,233-4,293,559 | - | C1H3g05489 | C2H3g11506 | LOC_Os03g09310 | Os03g0193225 | - | Detail |
| CX3g026217 | 3:4,300,810-4,301,751 | + | C1H3g15014 | C2H3g05261 | LOC_Os03g09820 | Os03g0193600 | - | Detail |