| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24166 | 3:10,368,569-10,374,959 | - | C2H3g16949 | CX3g027287 | LOC_Os03g20530 | Os03g0321500 | OsBBP1 | Detail |
| C1H3g22188 | 3:10,389,153-10,390,196 | + | C2H3g07472 | CX3g030570 | LOC_Os03g20550 | Os03g0321700 | OsWRKY31, OsWRKY55 | Detail |
| C1H3g31320 | 3:10,391,340-10,392,065 | - | C2H3g22893 | CX3g029278 | LOC_Os03g20560 | Os03g0321800 | - | Detail |
| C1H3g15973 | 3:10,392,341-10,393,283 | + | C2H3g22031 | CX3g025622 | LOC_Os03g20570 | Os03g0321900 | - | Detail |
| C1H3g10139 | 3:10,395,125-10,401,411 | - | C2H3g29406 | CX3g027052 | LOC_Os03g20580 | Os03g0322000 | - | Detail |
| C1H3g01616 | 3:10,401,796-10,402,290 | + | C2H3g13047 | CX3g026700 | LOC_Os03g20590 | - | - | Detail |
| C1H3g09864 | 3:10,402,723-10,403,079 | - | C2H3g25454 | CX3g029175 | LOC_Os03g20600 | Os03g0322200 | - | Detail |
| C1H3g20781 | 3:10,405,477-10,410,096 | + | C2H3g26982 | CX3g026757 | LOC_Os03g20630 | Os03g0322500 | - | Detail |
| C1H3g30541 | 3:10,410,658-10,412,920 | + | C2H3g00494 | CX3g029187 | LOC_Os03g20640 | Os03g0322600 | - | Detail |
| C1H3g17698 | 3:10,413,261-10,416,734 | - | C2H3g22567 | CX3g029676 | LOC_Os03g20650 | Os03g0322700 | - | Detail |
| C1H3g30170 | 3:10,426,497-10,430,175 | + | C2H3g08879 | CX3g029908 | LOC_Os03g20670 | Os03g0322800 | - | Detail |
| C1H3g03964 | 3:10,434,557-10,435,673 | - | C2H3g26182 | CX3g027559 | LOC_Os03g20680 | Os03g0322900 | LEA17, OsLEA17, OsLEA3-2, LEA3-2 | Detail |
| C1H3g25408 | 3:10,441,031-10,447,096 | + | - | - | - | - | - | Detail |
| C1H3g04844 | 3:10,450,166-10,455,634 | + | C2H3g04983 | CX3g028829 | LOC_Os03g20720 | Os03g0323500 | - | Detail |
| C1H3g01461 | 3:10,456,139-10,456,651 | - | C2H3g18862 | CX3g028214 | LOC_Os03g20730 | Os03g0323600 | - | Detail |
| C1H3g26967 | 3:10,465,665-10,471,153 | + | C2H3g17326 | CX3g025044 | LOC_Os03g20750 | Os03g0323800 | OsVDAC8 | Detail |
| C1H3g06354 | 3:10,475,868-10,477,209 | + | C2H3g13354 | CX3g030983 | LOC_Os03g20760 | Os03g0323900 | - | Detail |
| C1H3g25962 | 3:10,496,675-10,498,600 | + | C2H3g07692 | CX3g027267 | LOC_Os03g20790 | Os03g0324300 | - | Detail |
| C1H3g16108 | 3:10,509,294-10,512,515 | - | C2H3g01747 | CX3g029464 | LOC_Os03g20840 | Os03g0324600 | - | Detail |
| C1H3g01814 | 3:10,532,750-10,535,651 | + | C2H3g25599 | CX3g030289 | LOC_Os03g20850 | Os03g0324700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028169 | 3:3,886,117-3,888,240 | - | C1H3g06804 | C2H3g20986 | LOC_Os03g08640 | Os03g0184700 | OsORC2 | Detail |
| CX3g031060 | 3:3,889,411-3,889,600 | - | C1H3g20941 | C2H1g09490 | LOC_Os01g63150 | Os01g0850200 | - | Detail |
| CX3g028411 | 3:3,899,501-3,900,427 | + | C1H3g17927 | C2H3g00273 | LOC_Os03g08660 | Os03g0185000 | OsSAT2;1 | Detail |
| CX3g025419 | 3:3,906,652-3,910,168 | - | C1H3g12755 | C2H3g11839 | LOC_Os03g08680 | Os03g0185200 | - | Detail |
| CX3g025760 | 3:3,913,967-3,915,127 | - | C1H3g28231 | C2H3g29116 | LOC_Os03g08690 | Os03g0185400 | - | Detail |
| CX3g030578 | 3:3,917,170-3,923,385 | + | C1H3g23204 | C2H3g02824 | LOC_Os03g08700 | Os03g0185500 | - | Detail |
| CX3g029404 | 3:3,924,214-3,924,591 | + | C1H3g14315 | C2H3g03896 | LOC_Os03g08710 | Os03g0185600 | - | Detail |
| CX3g029210 | 3:3,927,010-3,928,368 | - | C1H3g08110 | C2H3g03932 | LOC_Os03g08720 | Os03g0185700 | - | Detail |
| CX3g028148 | 3:3,930,464-3,934,450 | + | C1H3g08230 | C2H3g26196 | LOC_Os03g08730 | Os03g0186100 | - | Detail |
| CX3g031324 | 3:3,947,697-3,952,677 | + | C1H3g25573 | C2H3g17224 | LOC_Os03g08740 | Os03g0186500 | - | Detail |
| CX3g029023 | 3:3,953,938-3,960,474 | - | C1H3g14880 | C2H3g18825 | LOC_Os03g08754 | Os03g0186600 | OsMDP1, OsMADS47 | Detail |
| CX3g029172 | 3:3,967,114-3,969,672 | + | C1H3g04910 | C2H3g28859 | LOC_Os03g08770 | Os03g0186800 | - | Detail |
| CX3g026841 | 3:3,974,560-3,975,882 | + | C1H3g01713 | C2H3g12420 | LOC_Os03g08790 | Os03g0186900 | OsAP25 | Detail |
| CX3g028992 | 3:3,976,665-3,978,447 | - | C1H3g01138 | C2H3g16083 | LOC_Os03g08800 | Os03g0186950 | - | Detail |
| CX3g028590 | 3:3,978,708-3,981,105 | + | C1H3g25676 | C2H3g01321 | LOC_Os03g08810 | Os03g0187000 | - | Detail |
| CX3g025108 | 3:3,983,000-3,983,200 | + | - | - | - | - | - | Detail |
| CX3g028907 | 3:3,985,383-3,993,859 | + | C1H3g24115 | C2H3g18803 | LOC_Os03g08820 | Os03g0187100 | - | Detail |
| CX3g027040 | 3:3,995,661-4,003,363 | + | C1H3g08043 | C2H3g23594 | LOC_Os03g08830 | Os03g0187300 | - | Detail |
| CX3g029815 | 3:4,004,551-4,004,790 | + | - | - | - | - | - | Detail |
| CX3g027060 | 3:4,008,198-4,010,078 | + | C1H3g31610 | C2H3g02517 | LOC_Os03g08840 | Os03g0187400 | - | Detail |