| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g00064 | 5:1,606,398-1,609,211 | - | C2H5g12807 | CX5g041042 | LOC_Os05g04120 | Os05g0131500 | - | Detail |
| C1H5g06759 | 5:1,611,813-1,615,448 | - | C2H5g15022 | CX5g037262 | - | - | - | Detail |
| C1H5g22859 | 5:1,625,325-1,628,837 | + | C2H5g11311 | CX5g040539 | LOC_Os05g04150 | Os05g0131900 | - | Detail |
| C1H5g07219 | 5:1,630,458-1,637,540 | + | C2H5g00026 | CX5g038241 | LOC_Os05g04160 | Os05g0132000 | - | Detail |
| C1H5g01586 | 5:1,632,871-1,639,170 | - | C2H5g29271 | CX5g039267 | LOC_Os05g04170 | Os05g0132100 | - | Detail |
| C1H5g04909 | 5:1,650,474-1,650,692 | + | C2H5g16493 | - | - | - | - | Detail |
| C1H5g08013 | 5:1,653,259-1,657,297 | - | C2H5g30600 | CX5g040727 | LOC_Os05g04180 | Os05g0132400 | - | Detail |
| C1H5g03405 | 5:1,657,922-1,663,594 | - | C2H5g03082 | CX5g039156 | LOC_Os05g04190 | Os05g0132500 | - | Detail |
| C1H5g18309 | 5:1,676,531-1,677,946 | - | C2H5g05589 | CX5g037816 | LOC_Os05g04210 | Os05g0132700 | Os2R_MYB52 | Detail |
| C1H5g29537 | 5:1,702,580-1,705,557 | - | C2H5g27002 | CX5g038861 | LOC_Os05g04220 | Os05g0133100 | - | Detail |
| C1H5g10914 | 5:1,709,874-1,711,433 | + | C2H5g26178 | CX5g036771 | LOC_Os05g04240 | Os05g0133401 | - | Detail |
| C1H5g20409 | 5:1,715,482-1,725,999 | + | C2H5g08606 | CX5g039957 | LOC_Os05g04330 | Os05g0133900 | - | Detail |
| C1H5g02098 | 5:1,726,300-1,730,116 | - | C2H5g20537 | CX5g040252 | LOC_Os05g04340 | Os05g0134000 | OsSK13 | Detail |
| C1H5g20836 | 5:1,738,427-1,740,605 | + | C2H5g03032 | CX5g038101 | LOC_Os05g04360 | Os05g0134200 | - | Detail |
| C1H5g08049 | 5:1,741,821-1,746,478 | - | C2H5g30196 | CX5g040147 | LOC_Os05g04370 | Os05g0134300 | - | Detail |
| C1H5g14884 | 5:1,753,616-1,758,432 | + | C2H5g13007 | CX5g038822 | LOC_Os05g04380 | Os05g0134400 | - | Detail |
| C1H5g26531 | 5:1,767,133-1,769,067 | + | C2H5g21653 | CX5g038822 | LOC_Os05g04410 | Os05g0134700 | - | Detail |
| C1H5g31364 | 5:1,783,505-1,784,695 | + | C2H5g26476 | CX5g038822 | LOC_Os05g04440 | Os05g0134800 | - | Detail |
| C1H5g25410 | 5:1,789,023-1,790,370 | + | C2H5g21523 | CX5g038822 | LOC_Os05g04450 | Os05g0135000 | - | Detail |
| C1H5g19346 | 5:1,794,034-1,796,472 | - | C2H5g03728 | CX5g040620 | LOC_Os05g04460 | Os05g0135100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029073 | 3:3,212,047-3,213,381 | - | C1H3g09927 | C2H3g13648 | LOC_Os03g07180 | Os03g0168100 | - | Detail |
| CX3g027260 | 3:3,215,080-3,216,862 | + | C1H3g29196 | C2H3g15532 | LOC_Os03g07190 | Os03g0168200 | - | Detail |
| CX3g028572 | 3:3,217,330-3,218,921 | - | C1H3g00563 | C2H3g27665 | LOC_Os03g07200 | Os03g0168300 | - | Detail |
| CX3g029392 | 3:3,222,114-3,228,333 | + | C1H3g28864 | C2H3g04176 | LOC_Os03g07220 | Os03g0168400 | FLO10 | Detail |
| CX3g030074 | 3:3,228,604-3,230,285 | - | C1H3g15091 | C2H3g16262 | LOC_Os03g07226 | Os03g0168500 | - | Detail |
| CX3g027344 | 3:3,233,821-3,235,455 | - | C1H3g30181 | C2H3g22195 | LOC_Os03g07234 | Os03g0168550 | - | Detail |
| CX3g025173 | 3:3,237,659-3,239,590 | - | C1H3g19869 | C2H3g27571 | LOC_Os03g07250 | Os03g0168600 | CYP704B2, OsCYP704B2 | Detail |
| CX3g027461 | 3:3,240,702-3,242,309 | - | C1H3g04648 | C2H3g09688 | LOC_Os03g07260 | Os03g0168700 | - | Detail |
| CX3g029686 | 3:3,243,286-3,245,088 | + | C1H3g06973 | C2H3g10633 | LOC_Os03g07290 | Os03g0168900 | OsGERLP | Detail |
| CX3g029329 | 3:3,246,187-3,249,081 | + | C1H3g22339 | C2H3g29541 | LOC_Os03g07300 | Os03g0169100 | - | Detail |
| CX3g026826 | 3:3,249,979-3,253,225 | - | C1H3g05071 | C2H3g19913 | LOC_Os03g07310 | Os03g0169000 | - | Detail |
| CX3g027561 | 3:3,258,734-3,260,284 | + | C1H3g30733 | C2H3g06080 | LOC_Os03g07330 | Os03g0169300 | - | Detail |
| CX3g029153 | 3:3,262,022-3,262,793 | - | C1H3g17744 | C2H3g03131 | LOC_Os03g07340 | Os03g0169400 | - | Detail |
| CX3g030421 | 3:3,263,078-3,267,517 | + | C1H3g09565 | C2H3g06080 | LOC_Os03g07350 | Os03g0169500 | OsCSLA4 | Detail |
| CX3g029943 | 3:3,273,041-3,275,304 | + | C1H3g30713 | C2H3g15611 | LOC_Os03g07360 | Os03g0169600 | RDD4, OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12 | Detail |
| CX3g029455 | 3:3,278,800-3,280,096 | - | C1H3g07573 | C2H3g04475 | LOC_Os03g07370 | Os03g0169800 | WSL9 | Detail |
| CX3g026502 | 3:3,281,819-3,284,018 | - | C1H3g28123 | C2H3g13284 | LOC_Os03g07380 | Os03g0169900 | - | Detail |
| CX3g030142 | 3:3,289,764-3,290,129 | - | C1H3g30140 | C2H3g19051 | LOC_Os03g07400 | Os03g0170100 | - | Detail |
| CX3g026147 | 3:3,293,493-3,296,923 | + | C1H3g19291 | C2H3g20350 | LOC_Os03g07420 | Os03g0170300 | - | Detail |
| CX3g030033 | 3:3,298,046-3,300,881 | - | C1H3g10171 | C2H3g22587 | LOC_Os03g07430 | Os03g0170400 | OsRLCK102 | Detail |