| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g19013 | 4:17,293,022-17,293,321 | + | C1H4g13967 | CX4g035834 | LOC_Os04g33560 | Os04g0411200 | - | Detail |
| C2H4g14818 | 4:17,296,776-17,297,201 | + | C1H4g02095 | CX4g035203 | - | - | - | Detail |
| C2H4g06840 | 4:17,306,701-17,308,226 | - | C1H4g06511 | CX4g034096 | LOC_Os04g33570 | Os04g0411400 | RCN4 | Detail |
| C2H4g13082 | 4:17,316,644-17,317,192 | + | C1H4g03675 | - | LOC_Os04g33580 | - | - | Detail |
| C2H4g18183 | 4:17,333,834-17,339,321 | + | C1H4g04480 | CX4g034692 | LOC_Os04g33590 | Os04g0411800 | - | Detail |
| C2H4g17971 | 4:17,341,591-17,346,361 | + | C1H4g04480 | CX4g035360 | LOC_Os04g33600 | Os04g0412000 | - | Detail |
| C2H4g01788 | 4:17,353,943-17,354,566 | + | C1H4g02994 | CX4g035334 | LOC_Os04g33610 | Os04g0412100 | OsBIC1 | Detail |
| C2H4g00589 | 4:17,361,858-17,362,316 | + | C1H4g08221 | CX4g033895 | LOC_Os04g33630 | Os04g0412200 | - | Detail |
| C2H4g24079 | 4:17,367,073-17,382,578 | + | C1H4g08556 | CX4g035419 | LOC_Os04g33660 | Os04g0412500 | - | Detail |
| C2H4g20884 | 4:17,389,543-17,390,328 | + | - | CX2g021594 | LOC_Os04g33670 | Os04g0412700 | - | Detail |
| C2H4g11928 | 4:17,391,230-17,392,576 | + | - | CX4g034454 | LOC_Os04g33680 | Os04g0412800 | - | Detail |
| C2H4g27573 | 4:17,393,756-17,404,376 | + | C1H4g15980 | CX4g035285 | LOC_Os04g33690 | Os04g0412900 | - | Detail |
| C2H4g17905 | 4:17,404,580-17,408,996 | - | C1H4g11558 | CX4g032656 | LOC_Os04g33700 | Os04g0413000 | - | Detail |
| C2H4g06805 | 4:17,411,768-17,414,162 | + | C1H4g31098 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C2H4g13973 | 4:17,418,965-17,424,157 | + | C1H4g06839 | CX4g035303 | LOC_Os04g33740 | Os04g0413500 | GIF1, gif1, CIN2, OsCIN2, OsGIF1, WB1 | Detail |
| C2H4g25683 | 4:17,446,668-17,450,629 | + | C1H4g19252 | CX4g031791 | LOC_Os04g33770 | Os04g0414000 | - | Detail |
| C2H4g24793 | 4:17,453,525-17,458,645 | + | C1H4g03882 | CX4g033946 | LOC_Os04g33780 | Os04g0414100 | - | Detail |
| C2H4g26864 | 4:17,465,526-17,466,491 | + | C1H4g02836 | CX4g034105 | LOC_Os04g33810 | Os04g0414300 | - | Detail |
| C2H4g04832 | 4:17,475,265-17,477,957 | + | C1H4g11612 | CX4g031478 | LOC_Os04g33830 | Os04g0414700 | - | Detail |
| C2H4g14107 | 4:17,489,153-17,489,745 | - | C1H4g11357 | CX4g032373 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025536 | 3:3,089,891-3,090,322 | + | C1H3g17647 | C2H3g07914 | - | Os03g0165375 | - | Detail |
| CX3g028153 | 3:3,094,040-3,099,496 | - | C1H3g30263 | C2H3g24716 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| CX3g025565 | 3:3,102,216-3,102,377 | + | - | - | - | - | - | Detail |
| CX3g027771 | 3:3,108,735-3,119,266 | - | C1H3g12191 | C2H3g14394 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| CX3g030842 | 3:3,120,809-3,122,893 | + | C1H3g13896 | C2H3g15746 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| CX3g028104 | 3:3,124,556-3,127,327 | - | C1H3g22228 | C2H3g22818 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| CX3g026438 | 3:3,131,842-3,132,278 | - | C1H3g06157 | C2H3g11279 | - | - | - | Detail |
| CX3g028480 | 3:3,132,584-3,134,131 | - | C1H3g06157 | C2H3g11279 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| CX3g025523 | 3:3,136,475-3,138,608 | + | C1H3g11602 | C2H3g30212 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| CX3g027208 | 3:3,139,331-3,141,213 | + | C1H3g09271 | C2H3g23098 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| CX3g027399 | 3:3,141,680-3,145,454 | - | C1H3g01458 | C2H3g15876 | LOC_Os03g07060 | Os03g0166600 | - | Detail |
| CX3g030094 | 3:3,152,829-3,157,188 | + | C1H3g04033 | C2H3g12538 | LOC_Os03g07080 | Os03g0166800 | - | Detail |
| CX3g030196 | 3:3,160,634-3,162,163 | + | C1H3g18965 | C2H3g19555 | LOC_Os03g07100 | Os03g0167000 | - | Detail |
| CX3g025455 | 3:3,164,885-3,167,759 | - | C1H3g05997 | C2H3g27991 | LOC_Os03g07110 | Os03g0167200 | OsIQM2 | Detail |
| CX3g027989 | 3:3,172,070-3,175,966 | + | C1H3g25407 | C2H3g02351 | LOC_Os03g07120 | Os03g0167400 | - | Detail |
| CX3g026239 | 3:3,178,065-3,185,966 | + | C1H3g07433 | C2H3g10661 | LOC_Os03g07130 | Os03g0167500 | OsRMR3, OsRMR1, RMR1 | Detail |
| CX3g025251 | 3:3,188,680-3,191,585 | + | C1H3g28690 | C2H3g14503 | LOC_Os03g07140 | Os03g0167600 | DPW | Detail |
| CX3g025657 | 3:3,192,408-3,196,325 | - | C1H3g18783 | C2H3g13249 | LOC_Os03g07150 | Os03g0167700 | OsPP2A-5 | Detail |
| CX3g026055 | 3:3,198,689-3,202,714 | + | C1H3g01595 | C2H3g28397 | LOC_Os03g07160 | Os03g0167800 | - | Detail |
| CX3g029636 | 3:3,208,641-3,211,475 | + | C1H3g17186 | C2H3g21676 | LOC_Os03g07170 | Os03g0168000 | - | Detail |