| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g02380 | 9:16,963,644-16,965,107 | + | C2H9g20646 | CX9g056068 | LOC_Os09g34930 | Os09g0521100 | - | Detail |
| C1H9g10173 | 9:16,970,360-16,971,499 | - | C2H8g03110 | - | LOC_Os09g34950 | Os09g0521300 | - | Detail |
| C1H9g10520 | 9:16,973,922-16,977,725 | + | C2H9g14810 | CX9g057233 | LOC_Os09g34960 | Os09g0521400 | - | Detail |
| C1H9g25845 | 9:16,978,628-16,982,043 | - | C2H9g26372 | CX9g055738 | LOC_Os09g34970 | Os09g0521500 | - | Detail |
| C1H9g12508 | 9:16,983,878-16,987,028 | - | C2H9g23293 | CX9g056886 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| C1H9g18470 | 9:16,987,133-16,989,913 | - | C2H9g23293 | CX9g056886 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| C1H9g22775 | 9:16,990,571-16,994,638 | + | C2H9g12959 | CX9g058042 | LOC_Os09g35000 | Os09g0521900 | RAD, OsGEN1, rad, rad*, OsRAD, GEN1, OsGEN-L | Detail |
| C1H9g14501 | 9:16,996,288-16,996,956 | - | C2H9g15745 | CX9g056315 | LOC_Os09g35010 | Os09g0522000 | OsDREB1B | Detail |
| C1H9g18822 | 9:16,999,862-17,000,602 | - | C2H9g15745 | CX9g057270 | LOC_Os09g35020 | Os09g0522100 | - | Detail |
| C1H9g24368 | 9:17,004,252-17,005,001 | - | C2H9g15745 | CX9g055958 | LOC_Os09g35030 | Os09g0522200 | OsDREB1A | Detail |
| C1H9g01072 | 9:17,039,373-17,041,007 | - | C2H9g10935 | CX9g057900 | LOC_Os09g35600 | Os09g0524300 | - | Detail |
| C1H9g22926 | 9:17,062,634-17,064,682 | - | C2H9g13075 | CX9g057513 | LOC_Os09g35630 | Os09g0524800 | - | Detail |
| C1H9g31662 | 9:17,073,293-17,076,161 | + | C2H9g25776 | CX9g056603 | LOC_Os09g35670 | Os09g0525200 | - | Detail |
| C1H9g25445 | 9:17,076,742-17,079,386 | - | C2H9g21918 | CX9g055378 | LOC_Os09g35680 | Os09g0525300 | - | Detail |
| C1H9g08911 | 9:17,083,815-17,088,515 | - | C2H9g16534 | CX9g058055 | LOC_Os09g35690 | Os09g0525400 | E3BB | Detail |
| C1H9g02024 | 9:17,089,268-17,089,681 | + | C2H9g00761 | CX9g057849 | LOC_Os09g35700 | Os09g0525500 | - | Detail |
| C1H9g15317 | 9:17,090,344-17,095,359 | - | C2H9g16855 | CX9g057451 | LOC_Os09g35710 | Os09g0525600 | - | Detail |
| C1H9g29308 | 9:17,097,510-17,103,645 | - | C2H9g29379 | CX9g057247 | LOC_Os09g35720 | Os09g0525700 | - | Detail |
| C1H9g08625 | 9:17,105,510-17,108,695 | - | C2H9g07857 | CX9g055034 | LOC_Os09g35730 | Os09g0525900 | - | Detail |
| C1H9g31758 | 9:17,115,330-17,116,050 | + | C2H9g18140 | CX9g054877 | LOC_Os09g35740 | Os09g0526000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025797 | 3:2,929,761-2,930,476 | + | C1H6g31651 | - | - | - | - | Detail |
| CX3g025573 | 3:2,936,877-2,937,068 | - | - | - | - | - | - | Detail |
| CX3g030288 | 3:2,939,862-2,942,360 | + | C1H3g19807 | C2H3g18217 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| CX3g030521 | 3:2,953,333-2,953,903 | + | C1H3g07386 | C2H3g01853 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| CX3g025819 | 3:2,961,589-2,962,619 | + | C1H3g24759 | C2H3g21314 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| CX3g029826 | 3:2,979,883-2,984,198 | + | C1H3g16348 | C2H3g14410 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| CX3g027686 | 3:2,985,600-2,988,071 | + | C1H3g16422 | C2H3g14053 | LOC_Os03g06710 | Os03g0162900 | - | Detail |
| CX3g025494 | 3:2,989,001-2,989,201 | + | - | - | - | - | - | Detail |
| CX3g025042 | 3:2,994,451-3,003,702 | + | C1H3g23541 | C2H3g06714 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| CX3g026090 | 3:3,004,672-3,008,463 | + | C1H3g17347 | C2H3g22693 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| CX3g029299 | 3:3,009,890-3,012,221 | - | C1H3g06657 | C2H3g01887 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| CX3g026455 | 3:3,013,684-3,016,050 | + | C1H3g03297 | C2H3g29355 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| CX3g031186 | 3:3,044,973-3,047,482 | + | C1H3g31538 | C2H3g08001 | LOC_Os03g06880 | Os03g0164700 | - | Detail |
| CX3g030325 | 3:3,048,908-3,051,263 | - | C1H3g13873 | C2H3g12377 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| CX3g029502 | 3:3,053,396-3,053,623 | + | C1H3g21506 | C2H3g23822 | - | Os03g0164901 | - | Detail |
| CX3g026349 | 3:3,057,705-3,067,629 | - | C1H3g29883 | C2H3g07393 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| CX3g030583 | 3:3,068,151-3,068,546 | + | - | - | - | Os03g0165050 | - | Detail |
| CX3g027841 | 3:3,070,246-3,072,192 | - | C1H3g17508 | C2H3g24120 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| CX3g027850 | 3:3,074,771-3,080,930 | + | C1H3g17985 | C2H3g12144 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| CX3g028821 | 3:3,081,780-3,083,849 | - | C1H3g21677 | C2H3g20116 | LOC_Os03g06930 | Os03g0165300 | - | Detail |