| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g05718 | 5:15,409,310-15,409,816 | - | C2H5g22420 | CX5g038007 | LOC_Os05g32460 | Os05g0390800 | - | Detail |
| C1H5g07216 | 5:15,432,633-15,436,847 | - | C2H5g25950 | CX5g039068 | LOC_Os05g32500 | Os05g0391200 | - | Detail |
| C1H5g06208 | 5:15,442,863-15,451,635 | + | C2H5g11715 | CX5g037982 | LOC_Os05g32530 | Os05g0391500 | - | Detail |
| C1H5g19666 | 5:15,454,392-15,463,189 | - | C2H5g16821 | CX5g039136 | LOC_Os05g32544 | Os05g0391600 | OsXYXT2 | Detail |
| C1H5g12673 | 5:15,484,546-15,496,517 | - | C2H5g28005 | CX5g038331 | LOC_Os05g32570 | Os05g0392000 | - | Detail |
| C1H5g15655 | 5:15,500,534-15,506,683 | + | C2H5g04545 | CX5g040945 | LOC_Os05g32580 | Os05g0392100 | - | Detail |
| C1H5g08588 | 5:15,511,941-15,513,705 | + | C2H5g19741 | CX5g040654 | LOC_Os05g32590 | Os05g0392200 | - | Detail |
| C1H5g13943 | 5:15,514,634-15,520,577 | + | C2H5g27504 | CX5g040645 | LOC_Os05g32600 | Os05g0392300 | - | Detail |
| C1H5g04324 | 5:15,524,419-15,530,582 | + | C2H5g25979 | CX5g037808 | LOC_Os05g32610 | Os05g0392400 | OsCHR742, CHR742 | Detail |
| C1H5g18105 | 5:15,539,055-15,542,936 | - | C2H5g29305 | CX5g037970 | LOC_Os05g32630 | Os05g0392700 | - | Detail |
| C1H5g12163 | 5:15,555,068-15,559,897 | + | C2H5g30679 | CX5g040909 | LOC_Os05g32660 | Os05g0393100 | - | Detail |
| C1H5g14541 | 5:15,561,131-15,561,886 | + | C2H5g16194 | CX5g040046 | LOC_Os05g32670 | Os05g0393200 | - | Detail |
| C1H5g14141 | 5:15,566,478-15,571,908 | + | C2H5g06211 | CX5g038745 | LOC_Os05g32680 | Os05g0393400 | - | Detail |
| C1H5g24658 | 5:15,588,595-15,591,009 | - | - | - | LOC_Os05g32710 | Os05g0393700 | OsISA2, ISA2 | Detail |
| C1H5g03286 | 5:15,594,234-15,599,476 | + | C2H5g04254 | CX5g038709 | LOC_Os05g32720 | Os05g0393800 | - | Detail |
| C1H5g29107 | 5:15,600,045-15,601,715 | - | C2H5g00793 | CX5g040583 | LOC_Os05g32730 | Os05g0393900 | - | Detail |
| C1H5g22904 | 5:15,606,933-15,611,878 | + | C2H5g30102 | CX5g037722 | LOC_Os05g32760 | Os05g0394200 | - | Detail |
| C1H5g06210 | 5:15,646,790-15,651,091 | - | C2H5g26994 | CX5g039171 | LOC_Os05g32810 | Os05g0394900 | - | Detail |
| C1H5g13219 | 5:15,651,865-15,653,709 | - | C2H5g26994 | CX5g039171 | LOC_Os05g32820 | Os05g0395000 | - | Detail |
| C1H5g24739 | 5:15,660,919-15,667,559 | + | C2H5g27249 | CX5g038891 | LOC_Os05g32850 | Os05g0395300 | DPS1, OsCBSDUF1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025627 | 3:2,799,801-2,800,274 | - | C1H3g26257 | C2H3g24140 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| CX3g029121 | 3:2,802,398-2,802,556 | + | - | - | - | - | - | Detail |
| CX3g025658 | 3:2,804,691-2,810,998 | + | C1H3g14921 | C2H3g08821 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| CX3g028864 | 3:2,812,778-2,813,338 | + | C1H10g04845 | - | LOC_Os03g06420 | Os03g0160200 | - | Detail |
| CX3g027015 | 3:2,815,906-2,816,199 | - | C1H3g16143 | C2H3g01208 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| CX3g030159 | 3:2,819,263-2,822,440 | - | C1H3g24862 | C2H3g27894 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| CX3g027024 | 3:2,832,276-2,835,320 | - | C1H3g27076 | C2H3g10921 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| CX3g031001 | 3:2,843,435-2,844,043 | - | C1H3g12946 | C2H3g17145 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| CX3g025715 | 3:2,854,108-2,857,197 | + | C1H3g27407 | C2H3g23882 | - | - | - | Detail |
| CX3g027922 | 3:2,862,127-2,870,160 | + | C1H3g11682 | C2H3g05410 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| CX3g029615 | 3:2,871,187-2,876,200 | - | C1H3g12948 | C2H3g11481 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| CX3g030950 | 3:2,881,702-2,881,875 | - | - | - | - | - | - | Detail |
| CX3g031150 | 3:2,888,115-2,890,003 | + | C1H3g19950 | C2H3g04338 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| CX3g029485 | 3:2,897,946-2,900,238 | + | C1H3g16884 | C2H3g04897 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| CX3g025939 | 3:2,905,375-2,905,524 | + | - | - | - | - | - | Detail |
| CX3g029738 | 3:2,905,701-2,906,162 | - | C1H3g31680 | C2H3g20671 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| CX3g026348 | 3:2,910,519-2,910,761 | - | - | - | - | - | - | Detail |
| CX3g031187 | 3:2,914,365-2,914,532 | + | - | - | - | - | - | Detail |
| CX3g029835 | 3:2,921,953-2,924,128 | + | C1H3g19723 | C2H3g16543 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| CX3g029527 | 3:2,925,685-2,927,899 | + | C1H3g17239 | C2H3g18983 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |