| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g13518 | 4:9,687,746-9,690,979 | + | C2H4g23780 | CX4g033974 | LOC_Os04g20920 | Os04g0278000 | - | Detail |
| C1H4g08106 | 4:9,696,683-9,700,969 | + | C2H4g19131 | - | - | Os04g0278200 | - | Detail |
| C1H4g08493 | 4:9,704,612-9,706,695 | + | C2H4g19131 | - | - | Os04g0278200 | - | Detail |
| C1H4g28381 | 4:9,714,263-9,716,181 | + | C2H4g26132 | - | LOC_Os04g20960 | Os04g0278200 | - | Detail |
| C1H4g16087 | 4:9,721,944-9,723,432 | + | C2H4g24571 | - | LOC_Os04g20960 | - | - | Detail |
| C1H4g24179 | 4:9,726,975-9,733,469 | - | C2H4g13705 | CX4g032111 | LOC_Os04g20990 | Os04g0278900 | - | Detail |
| C1H4g08095 | 4:9,743,411-9,747,304 | + | C2H4g00443 | CX4g036285 | LOC_Os04g21030 | Os04g0279700 | - | Detail |
| C1H4g16922 | 4:9,752,197-9,771,184 | + | C2H4g17139 | CX4g036567 | LOC_Os04g21110 | Os04g0280200 | - | Detail |
| C1H4g11254 | 4:9,791,019-9,793,319 | + | C2H4g01919 | CX4g036324 | LOC_Os04g21130 | Os04g0280500 | - | Detail |
| C1H4g01486 | 4:9,796,170-9,800,845 | - | C2H4g13553 | CX4g036151 | LOC_Os04g21160 | Os04g0280600 | AM20 | Detail |
| C1H4g03778 | 4:9,832,238-9,834,634 | + | C2H4g02035 | CX4g034673 | LOC_Os04g21320 | Os04g0281900 | - | Detail |
| C1H4g09084 | 4:9,853,790-9,854,628 | + | C2H4g11476 | CX4g034086 | LOC_Os04g21340 | Os04g0282200 | - | Detail |
| C1H4g28129 | 4:9,872,199-9,872,525 | - | - | CX4g031497 | LOC_Os04g21350 | Os04g0282400 | OsFPFL4 | Detail |
| C1H4g11794 | 4:9,910,322-9,914,324 | + | C2H4g24311 | CX4g034429 | - | - | - | Detail |
| C1H4g09417 | 4:9,937,490-9,938,329 | + | C2H4g03872 | CX4g031757 | LOC_Os04g21570 | Os04g0283600 | - | Detail |
| C1H4g23947 | 4:9,942,843-9,944,126 | + | - | CX4g034036 | LOC_Os04g21590 | Os04g0283800 | - | Detail |
| C1H4g21305 | 4:9,944,932-9,949,218 | - | C2H4g27929 | CX4g035189 | - | Os04g0283900 | - | Detail |
| C1H4g30260 | 4:9,953,231-9,959,856 | - | C2H4g30129 | CX4g036385 | LOC_Os04g21610 | Os04g0284100 | - | Detail |
| C1H4g19039 | 4:9,971,901-9,980,600 | + | C2H4g28829 | - | - | - | - | Detail |
| C1H4g06564 | 4:9,972,002-9,972,283 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025627 | 3:2,799,801-2,800,274 | - | C1H3g26257 | C2H3g24140 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| CX3g029121 | 3:2,802,398-2,802,556 | + | - | - | - | - | - | Detail |
| CX3g025658 | 3:2,804,691-2,810,998 | + | C1H3g14921 | C2H3g08821 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| CX3g028864 | 3:2,812,778-2,813,338 | + | C1H10g04845 | - | LOC_Os03g06420 | Os03g0160200 | - | Detail |
| CX3g027015 | 3:2,815,906-2,816,199 | - | C1H3g16143 | C2H3g01208 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| CX3g030159 | 3:2,819,263-2,822,440 | - | C1H3g24862 | C2H3g27894 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| CX3g027024 | 3:2,832,276-2,835,320 | - | C1H3g27076 | C2H3g10921 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| CX3g031001 | 3:2,843,435-2,844,043 | - | C1H3g12946 | C2H3g17145 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| CX3g025715 | 3:2,854,108-2,857,197 | + | C1H3g27407 | C2H3g23882 | - | - | - | Detail |
| CX3g027922 | 3:2,862,127-2,870,160 | + | C1H3g11682 | C2H3g05410 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| CX3g029615 | 3:2,871,187-2,876,200 | - | C1H3g12948 | C2H3g11481 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| CX3g030950 | 3:2,881,702-2,881,875 | - | - | - | - | - | - | Detail |
| CX3g031150 | 3:2,888,115-2,890,003 | + | C1H3g19950 | C2H3g04338 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| CX3g029485 | 3:2,897,946-2,900,238 | + | C1H3g16884 | C2H3g04897 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| CX3g025939 | 3:2,905,375-2,905,524 | + | - | - | - | - | - | Detail |
| CX3g029738 | 3:2,905,701-2,906,162 | - | C1H3g31680 | C2H3g20671 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| CX3g026348 | 3:2,910,519-2,910,761 | - | - | - | - | - | - | Detail |
| CX3g031187 | 3:2,914,365-2,914,532 | + | - | - | - | - | - | Detail |
| CX3g029835 | 3:2,921,953-2,924,128 | + | C1H3g19723 | C2H3g16543 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| CX3g029527 | 3:2,925,685-2,927,899 | + | C1H3g17239 | C2H3g18983 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |