| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g06764 | 2:4,415,986-4,419,645 | + | C2H2g11577 | CX2g024862 | LOC_Os02g09620 | Os02g0189300 | - | Detail |
| C1H2g26037 | 2:4,420,482-4,421,505 | - | C2H2g10166 | CX2g024704 | LOC_Os02g09630 | Os02g0189400 | - | Detail |
| C1H2g12021 | 2:4,430,237-4,430,836 | - | C2H2g02446 | CX2g020740 | LOC_Os02g09650 | Os02g0797100 | - | Detail |
| C1H2g06273 | 2:4,437,020-4,444,070 | + | C2H2g24841 | - | - | - | - | Detail |
| C1H2g06467 | 2:4,438,145-4,440,467 | - | C2H2g02506 | CX2g022600 | LOC_Os02g09720 | Os02g0189800 | - | Detail |
| C1H2g01542 | 2:4,447,905-4,451,405 | - | C2H2g14951 | - | - | - | - | Detail |
| C1H2g30083 | 2:4,467,183-4,476,616 | + | C2H2g24841 | - | - | Os02g0189900 | - | Detail |
| C1H2g16474 | 2:4,469,625-4,474,498 | - | C2H2g18329 | CX2g021632 | LOC_Os02g09720 | Os02g0190000 | - | Detail |
| C1H2g07631 | 2:4,477,997-4,479,524 | + | C2H2g22278 | CX2g021632 | LOC_Os02g09710 | Os02g0190100 | - | Detail |
| C1H2g04187 | 2:4,484,254-4,493,683 | - | C2H2g18329 | CX2g021192 | LOC_Os02g09720 | Os02g0190300 | - | Detail |
| C1H2g21943 | 2:4,517,415-4,523,389 | + | C2H2g06769 | CX2g022054 | LOC_Os02g09740 | Os02g0190500 | - | Detail |
| C1H2g24836 | 2:4,524,050-4,525,519 | - | - | CX2g022421 | LOC_Os02g09750 | Os02g0190600 | OsLCYbeta, OsLCYβ | Detail |
| C1H2g15779 | 2:4,528,690-4,529,268 | - | C2H2g16178 | CX2g023142 | LOC_Os02g09760 | Os02g0190700 | - | Detail |
| C1H2g04808 | 2:4,534,144-4,538,120 | - | C2H2g05420 | CX2g021348 | LOC_Os02g09770 | Os02g0190800 | - | Detail |
| C1H2g13385 | 2:4,540,537-4,541,961 | - | C2H2g18343 | CX2g020459 | LOC_Os02g09780 | Os02g0190900 | - | Detail |
| C1H2g24338 | 2:4,558,602-4,561,334 | - | C2H2g20012 | CX2g022282 | LOC_Os02g09790 | Os02g0191000 | NBS-Str1 | Detail |
| C1H2g19462 | 2:4,564,768-4,566,899 | + | C2H2g13140 | CX2g024733 | LOC_Os02g09800 | Os02g0191200 | - | Detail |
| C1H2g16598 | 2:4,569,100-4,573,528 | - | C2H2g19527 | CX2g019369 | LOC_Os02g09810 | Os02g0191300 | OsATL6 | Detail |
| C1H2g02472 | 2:4,576,028-4,578,203 | + | C2H2g07551 | CX2g021648 | LOC_Os02g09820 | Os02g0191500 | - | Detail |
| C1H2g05141 | 2:4,579,357-4,579,866 | - | C2H2g25351 | CX2g022552 | LOC_Os02g09830 | Os02g0191600 | OsbZIP16 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g028095 | 3:2,355,621-2,356,202 | + | C1H3g11420 | C2H3g11846 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| CX3g027224 | 3:2,358,598-2,360,848 | - | C1H3g01679 | C2H3g18230 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| CX3g025933 | 3:2,368,173-2,369,229 | - | C1H3g05732 | C2H3g10578 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| CX3g026676 | 3:2,371,426-2,372,760 | - | C1H3g20087 | C2H3g08315 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| CX3g026748 | 3:2,379,388-2,382,923 | + | C1H3g24625 | C2H3g07329 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| CX3g025264 | 3:2,386,441-2,388,658 | - | C1H3g03956 | C2H3g09418 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| CX3g028941 | 3:2,390,662-2,391,294 | - | - | - | LOC_Os03g05490 | - | - | Detail |
| CX3g031194 | 3:2,396,027-2,396,657 | + | C1H3g20130 | C2H3g30161 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| CX3g024956 | 3:2,399,650-2,400,507 | - | C1H3g20743 | C2H3g15126 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| CX3g027575 | 3:2,411,551-2,414,644 | - | C1H3g13230 | C2H3g27191 | LOC_Os03g05520 | Os03g0149200 | - | Detail |
| CX3g026711 | 3:2,420,663-2,422,932 | - | C1H3g28897 | C2H3g02809 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| CX3g029578 | 3:2,428,167-2,430,879 | + | C1H3g27908 | C2H3g29786 | LOC_Os03g05540 | Os03g0149400 | - | Detail |
| CX3g030199 | 3:2,439,282-2,440,208 | - | C1H3g00185 | C2H3g01040 | LOC_Os03g05560 | Os03g0149700 | - | Detail |
| CX3g028233 | 3:2,446,786-2,447,685 | - | C1H3g00155 | C2H3g29045 | LOC_Os03g05570 | Os03g0149800 | - | Detail |
| CX3g030128 | 3:2,463,485-2,463,910 | + | C1H3g19498 | C2H3g13096 | LOC_Os03g05590 | Os03g0150200 | OsAP23 | Detail |
| CX3g030522 | 3:2,466,116-2,467,741 | + | C1H3g28178 | C2H3g29028 | LOC_Os03g05610 | Os03g0150500 | - | Detail |
| CX3g029750 | 3:2,469,565-2,471,148 | - | C1H3g29432 | C2H3g30077 | LOC_Os03g05620 | Os03g0150600 | - | Detail |
| CX3g028575 | 3:2,485,064-2,486,650 | - | C1H3g04203 | C2H3g28429 | LOC_Os03g05640 | Os03g0150800 | PT2, OsPT2, PTH1-2, OsPht1;2 | Detail |
| CX3g030168 | 3:2,491,437-2,496,078 | - | C1H3g13409 | C2H3g24713 | LOC_Os03g05660 | Os03g0151100 | - | Detail |
| CX3g028756 | 3:2,500,246-2,508,833 | + | C1H3g18077 | C2H3g23634 | LOC_Os03g05680 | Os03g0151300 | Se14 | Detail |