| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027314 | 3:2,186,439-2,186,786 | + | - | C2H3g07589 | - | - | - | Detail |
| CX3g030916 | 3:2,204,893-2,206,707 | + | C1H3g06705 | C2H3g00158 | LOC_Os03g05110 | Os03g0144800 | - | Detail |
| CX3g027788 | 3:2,210,903-2,213,995 | - | C1H3g19955 | C2H3g20075 | LOC_Os03g05140 | Os03g0145102 | - | Detail |
| CX3g030193 | 3:2,225,808-2,228,861 | + | C1H3g25509 | C2H3g24545 | LOC_Os03g05180 | Os03g0145300 | - | Detail |
| CX3g027358 | 3:2,229,332-2,231,503 | - | C1H3g14347 | C2H3g14474 | - | Os03g0363100 | - | Detail |
| CX3g028191 | 3:2,233,479-2,241,725 | - | C1H3g07337 | C2H3g21503 | LOC_Os03g05200 | Os03g0145500 | - | Detail |
| CX3g025781 | 3:2,245,017-2,246,285 | - | C1H3g27104 | C2H3g25507 | LOC_Os03g05210 | Os03g0145600 | - | Detail |
| CX3g029694 | 3:2,247,079-2,249,393 | - | C1H3g18616 | C2H3g25373 | LOC_Os03g05260 | Os03g0145800 | - | Detail |
| CX3g030037 | 3:2,252,004-2,255,706 | + | C1H3g20465 | C2H3g07266 | LOC_Os03g05270 | Os03g0348900 | OsSRFP1, SDEL2 | Detail |
| CX3g028017 | 3:2,257,139-2,257,956 | - | C1H3g20268 | C2H3g21623 | - | - | - | Detail |
| CX3g029228 | 3:2,258,289-2,263,316 | + | C1H3g29909 | C2H3g05886 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| CX3g029808 | 3:2,267,506-2,269,005 | - | C1H3g25012 | C2H3g28085 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| CX3g025472 | 3:2,273,947-2,274,419 | + | C1H3g19868 | C2H3g09242 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| CX3g025739 | 3:2,278,752-2,282,324 | + | C1H3g27335 | C2H3g13895 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| CX3g026084 | 3:2,285,258-2,287,222 | + | C1H3g29062 | C2H3g11885 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| CX3g025922 | 3:2,288,696-2,308,844 | + | C1H3g17015 | C2H3g15286 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| CX3g030685 | 3:2,327,822-2,328,625 | + | C1H3g28231 | C2H3g29116 | LOC_Os03g05380 | Os03g0105300 | - | Detail |
| CX3g029888 | 3:2,330,117-2,332,020 | - | C1H3g30836 | C2H3g18202 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| CX3g028039 | 3:2,343,073-2,343,324 | + | - | - | - | - | - | Detail |
| CX3g025434 | 3:2,350,344-2,353,755 | - | C1H3g06760 | C2H3g23117 | LOC_Os03g05420 | Os03g0147700 | - | Detail |