| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g09189 | 3:33,002,790-33,008,902 | + | C2H3g14850 | CX3g027621 | LOC_Os03g62750 | Os03g0844700 | - | Detail |
| C1H3g04796 | 3:33,012,472-33,015,587 | - | C2H3g09934 | CX3g027114 | LOC_Os03g62780 | Os03g0844900 | - | Detail |
| C1H3g08823 | 3:33,016,070-33,017,510 | - | C2H3g04637 | CX3g027041 | LOC_Os03g62790 | Os03g0845000 | - | Detail |
| C1H3g29234 | 3:33,018,831-33,022,598 | - | C2H3g26108 | CX3g030975 | LOC_Os03g62830 | Os03g0845300 | - | Detail |
| C1H3g31847 | 3:33,023,412-33,023,972 | + | C2H3g24255 | CX3g025947 | LOC_Os03g62840 | - | - | Detail |
| C1H3g01054 | 3:33,024,826-33,033,780 | - | C2H3g26469 | CX3g027086 | LOC_Os03g62850 | Os03g0845500 | - | Detail |
| C1H3g13526 | 3:33,034,511-33,036,781 | - | C2H3g09183 | CX3g030387 | LOC_Os03g62860 | Os03g0845600 | - | Detail |
| C1H3g30582 | 3:33,037,842-33,039,542 | - | C2H3g07934 | CX3g028167 | LOC_Os03g62870 | Os03g0845700 | - | Detail |
| C1H3g07662 | 3:33,042,978-33,047,946 | + | C2H3g13863 | CX3g025569 | LOC_Os03g63020 | Os03g0847600 | - | Detail |
| C1H3g18227 | 3:33,056,349-33,061,777 | + | C2H3g03465 | CX3g030304 | LOC_Os03g63040 | Os03g0847800 | - | Detail |
| C1H3g18477 | 3:33,068,587-33,069,191 | + | C2H3g04348 | CX3g027249 | LOC_Os03g63060 | Os03g0847900 | - | Detail |
| C1H3g04389 | 3:33,071,711-33,075,041 | - | C2H3g21474 | CX3g030785 | LOC_Os03g63074 | Os03g0848100 | - | Detail |
| C1H3g15296 | 3:33,075,988-33,078,517 | - | C2H3g05478 | CX3g028645 | LOC_Os03g63074 | Os03g0848200 | OsPHY1 | Detail |
| C1H3g03652 | 3:33,080,148-33,083,172 | + | C2H3g28774 | CX3g026033 | LOC_Os03g63090 | Os03g0848300 | - | Detail |
| C1H3g28105 | 3:33,084,108-33,087,157 | - | C2H3g19380 | CX3g025110 | LOC_Os03g63110 | Os03g0848400 | - | Detail |
| C1H3g31410 | 3:33,089,112-33,091,789 | + | C2H3g29526 | CX3g025723 | LOC_Os03g63140 | Os03g0848600 | - | Detail |
| C1H3g23775 | 3:33,093,392-33,099,498 | - | C2H3g03590 | CX3g030365 | LOC_Os03g63240 | Os03g0849500 | - | Detail |
| C1H3g19612 | 3:33,101,925-33,107,579 | - | C2H3g13329 | CX3g026100 | LOC_Os03g63250 | Os03g0849600 | - | Detail |
| C1H3g10745 | 3:33,110,854-33,112,905 | + | C2H3g05145 | CX3g026065 | LOC_Os03g63260 | Os03g0849700 | - | Detail |
| C1H3g31123 | 3:33,110,962-33,111,215 | - | - | - | - | Os03g0849750 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025982 | 3:1,900,714-1,904,222 | + | C1H3g12595 | C2H3g19333 | LOC_Os03g04500 | Os03g0138000 | - | Detail |
| CX3g027153 | 3:1,906,424-1,913,688 | - | - | - | LOC_Os03g04520 | Os03g0138100 | - | Detail |
| CX3g028238 | 3:1,918,113-1,919,681 | + | C1H3g03175 | C2H3g18481 | LOC_Os03g04530 | Os03g0138200 | - | Detail |
| CX3g028187 | 3:1,922,527-1,922,799 | + | C1H3g14282 | C2H3g15460 | LOC_Os03g04545 | Os03g0138400 | - | Detail |
| CX3g026784 | 3:1,928,068-1,929,577 | + | C1H3g10085 | C2H3g21651 | LOC_Os03g04550 | Os03g0138500 | - | Detail |
| CX3g030039 | 3:1,930,264-1,933,737 | - | C1H3g00368 | C2H3g00575 | LOC_Os03g04560 | Os03g0138600 | - | Detail |
| CX3g028744 | 3:1,936,705-1,941,027 | - | C1H3g01644 | C2H3g22416 | LOC_Os03g04570 | Os03g0138700 | OsPTR1 | Detail |
| CX3g028323 | 3:1,943,894-1,944,877 | + | C1H3g14228 | C2H3g08919 | LOC_Os03g04580 | Os03g0138900 | - | Detail |
| CX3g027627 | 3:1,946,622-1,948,947 | + | C1H3g13763 | C2H3g29903 | LOC_Os03g04590 | Os03g0139100 | - | Detail |
| CX3g030974 | 3:1,949,805-1,955,095 | - | C1H3g21758 | C2H3g28589 | LOC_Os03g04600 | Os03g0139200 | - | Detail |
| CX3g025022 | 3:1,958,278-1,959,243 | + | C1H3g05378 | C2H3g22571 | LOC_Os03g04610 | Os03g0139400 | - | Detail |
| CX3g025825 | 3:1,960,889-1,964,535 | - | C1H3g00456 | C2H3g01677 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| CX3g025500 | 3:2,011,751-2,013,370 | + | C1H3g15064 | C2H3g29153 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| CX3g025906 | 3:2,014,046-2,014,475 | - | - | - | - | - | - | Detail |
| CX3g029016 | 3:2,016,362-2,018,398 | - | C1H3g07260 | C2H3g12329 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| CX3g029520 | 3:2,022,391-2,022,693 | + | - | - | - | - | - | Detail |
| CX3g026380 | 3:2,024,805-2,025,248 | - | C1H3g31769 | C2H3g13203 | - | Os03g0140650 | - | Detail |
| CX3g028112 | 3:2,028,126-2,029,382 | + | C1H3g10738 | C2H3g17473 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| CX3g026099 | 3:2,030,425-2,030,583 | - | - | - | - | Os07g0616100 | - | Detail |
| CX3g026550 | 3:2,031,918-2,032,091 | - | - | - | - | - | - | Detail |