| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22493 | 3:32,718,291-32,724,107 | + | C2H3g09641 | CX3g029422 | LOC_Os03g62090 | Os03g0837100 | - | Detail |
| C1H3g21977 | 3:32,733,115-32,733,312 | + | C2H3g16015 | - | LOC_Os03g62110 | Os03g0837300 | OsNaPRT1, LTS1 | Detail |
| C1H3g11581 | 3:32,733,442-32,739,587 | + | C2H3g09352 | CX3g030206 | LOC_Os03g62110 | Os04g0429800 | - | Detail |
| C1H3g11651 | 3:32,753,523-32,755,935 | - | C2H3g20340 | CX3g026601 | LOC_Os03g62160 | Os03g0837800 | - | Detail |
| C1H3g23631 | 3:32,757,417-32,762,648 | + | C2H3g14011 | CX3g030122 | LOC_Os03g62170 | Os03g0837900 | - | Detail |
| C1H3g04060 | 3:32,774,511-32,777,956 | + | C2H3g21930 | CX3g029514 | LOC_Os03g62200 | Os03g0838400 | - | Detail |
| C1H3g30110 | 3:32,777,139-32,779,369 | - | C2H3g30547 | - | - | - | - | Detail |
| C1H3g03475 | 3:32,778,104-32,778,490 | + | C2H3g29109 | CX3g029120 | LOC_Os03g62210 | Os03g0838500 | - | Detail |
| C1H3g08024 | 3:32,786,821-32,788,242 | - | C2H3g14459 | CX3g028242 | LOC_Os03g62240 | Os03g0838900 | - | Detail |
| C1H3g14166 | 3:32,789,738-32,792,287 | - | C2H3g18580 | CX3g026663 | LOC_Os03g62250 | Os03g0839000 | - | Detail |
| C1H3g19313 | 3:32,793,456-32,797,258 | - | C2H3g04219 | CX3g026956 | LOC_Os03g62260 | Os03g0839100 | - | Detail |
| C1H3g09907 | 3:32,804,564-32,808,236 | + | C2H3g25899 | CX3g025647 | LOC_Os03g62270 | Os03g0839200 | SMG4 | Detail |
| C1H3g11170 | 3:32,822,347-32,822,757 | - | C2H3g29754 | CX3g026655 | LOC_Os03g62330 | Os03g0839800 | - | Detail |
| C1H3g19828 | 3:32,826,289-32,830,846 | - | C2H3g16491 | CX3g027925 | LOC_Os03g62340 | Os03g0839900 | - | Detail |
| C1H3g10496 | 3:32,845,228-32,854,529 | - | C2H3g23134 | CX3g027463 | LOC_Os03g62388 | Os03g0840500 | - | Detail |
| C1H3g17885 | 3:32,855,180-32,859,042 | - | C2H3g17763 | CX3g031342 | LOC_Os03g62400 | Os03g0627100 | - | Detail |
| C1H3g03752 | 3:32,860,263-32,864,783 | - | C2H3g05770 | CX3g030069 | LOC_Os03g62410 | Os03g0840800 | - | Detail |
| C1H3g30697 | 3:32,866,112-32,868,876 | - | C2H3g27419 | CX3g028979 | LOC_Os03g62420 | Os03g0840900 | DVB1 | Detail |
| C1H3g04157 | 3:32,870,803-32,875,152 | - | C2H3g06584 | CX3g025236 | LOC_Os03g62430 | Os03g0841100 | - | Detail |
| C1H3g28796 | 3:32,878,895-32,880,325 | - | C2H3g16997 | CX3g026521 | LOC_Os03g62480 | Os03g0841600 | OsUGT706C2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g025982 | 3:1,900,714-1,904,222 | + | C1H3g12595 | C2H3g19333 | LOC_Os03g04500 | Os03g0138000 | - | Detail |
| CX3g027153 | 3:1,906,424-1,913,688 | - | - | - | LOC_Os03g04520 | Os03g0138100 | - | Detail |
| CX3g028238 | 3:1,918,113-1,919,681 | + | C1H3g03175 | C2H3g18481 | LOC_Os03g04530 | Os03g0138200 | - | Detail |
| CX3g028187 | 3:1,922,527-1,922,799 | + | C1H3g14282 | C2H3g15460 | LOC_Os03g04545 | Os03g0138400 | - | Detail |
| CX3g026784 | 3:1,928,068-1,929,577 | + | C1H3g10085 | C2H3g21651 | LOC_Os03g04550 | Os03g0138500 | - | Detail |
| CX3g030039 | 3:1,930,264-1,933,737 | - | C1H3g00368 | C2H3g00575 | LOC_Os03g04560 | Os03g0138600 | - | Detail |
| CX3g028744 | 3:1,936,705-1,941,027 | - | C1H3g01644 | C2H3g22416 | LOC_Os03g04570 | Os03g0138700 | OsPTR1 | Detail |
| CX3g028323 | 3:1,943,894-1,944,877 | + | C1H3g14228 | C2H3g08919 | LOC_Os03g04580 | Os03g0138900 | - | Detail |
| CX3g027627 | 3:1,946,622-1,948,947 | + | C1H3g13763 | C2H3g29903 | LOC_Os03g04590 | Os03g0139100 | - | Detail |
| CX3g030974 | 3:1,949,805-1,955,095 | - | C1H3g21758 | C2H3g28589 | LOC_Os03g04600 | Os03g0139200 | - | Detail |
| CX3g025022 | 3:1,958,278-1,959,243 | + | C1H3g05378 | C2H3g22571 | LOC_Os03g04610 | Os03g0139400 | - | Detail |
| CX3g025825 | 3:1,960,889-1,964,535 | - | C1H3g00456 | C2H3g01677 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| CX3g025500 | 3:2,011,751-2,013,370 | + | C1H3g15064 | C2H3g29153 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| CX3g025906 | 3:2,014,046-2,014,475 | - | - | - | - | - | - | Detail |
| CX3g029016 | 3:2,016,362-2,018,398 | - | C1H3g07260 | C2H3g12329 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| CX3g029520 | 3:2,022,391-2,022,693 | + | - | - | - | - | - | Detail |
| CX3g026380 | 3:2,024,805-2,025,248 | - | C1H3g31769 | C2H3g13203 | - | Os03g0140650 | - | Detail |
| CX3g028112 | 3:2,028,126-2,029,382 | + | C1H3g10738 | C2H3g17473 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| CX3g026099 | 3:2,030,425-2,030,583 | - | - | - | - | Os07g0616100 | - | Detail |
| CX3g026550 | 3:2,031,918-2,032,091 | - | - | - | - | - | - | Detail |