| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g18694 | 4:28,658,302-28,658,889 | - | C2H4g14418 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C1H4g06884 | 4:28,663,063-28,666,905 | - | C2H4g01093 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C1H4g28592 | 4:28,673,122-28,676,448 | - | C2H4g27076 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C1H4g12666 | 4:28,677,201-28,678,644 | - | C2H4g00324 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C1H4g04933 | 4:28,710,655-28,711,314 | - | C2H4g28891 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g01013 | 4:28,713,036-28,713,869 | - | C2H4g25523 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C1H4g17955 | 4:28,734,525-28,738,568 | - | C2H4g00723 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C1H4g25822 | 4:28,741,443-28,744,608 | + | C2H4g03628 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C1H4g16013 | 4:28,750,055-28,750,903 | + | C2H4g20686 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C1H4g25119 | 4:28,755,593-28,760,287 | - | C2H4g26419 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C1H4g03048 | 4:28,765,828-28,772,012 | + | C2H4g12616 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C1H4g02593 | 4:28,781,088-28,786,577 | + | C2H4g21483 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| C1H4g09680 | 4:28,821,780-28,824,455 | + | C2H4g14278 | CX4g036135 | LOC_Os04g55560 | Os04g0649100 | SHAT1, AP2/EREBP#043, AP2/EREBP43 | Detail |
| C1H4g00144 | 4:28,830,435-28,836,457 | + | C2H4g17474 | CX4g035239 | LOC_Os04g55570 | Os04g0649200 | - | Detail |
| C1H4g30735 | 4:28,845,828-28,846,709 | - | C2H4g02532 | CX4g032527 | LOC_Os04g55590 | Os04g0649400 | WOX4, OsWOX4, Os WOX4 | Detail |
| C1H4g22307 | 4:28,858,617-28,859,324 | + | C2H4g01325 | - | - | - | - | Detail |
| C1H4g26510 | 4:28,860,405-28,863,982 | - | C2H4g00524 | CX4g031472 | LOC_Os04g55620 | Os04g0649700 | - | Detail |
| C1H4g26377 | 4:28,867,909-28,868,871 | + | C2H4g24247 | CX4g033189 | LOC_Os04g55640 | Os04g0649900 | - | Detail |
| C1H4g19253 | 4:28,875,233-28,877,176 | + | C2H4g10875 | CX4g032778 | - | - | - | Detail |
| C1H4g30646 | 4:28,877,801-28,881,460 | - | C2H4g01573 | CX4g032034 | LOC_Os04g55650 | Os04g0650000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027728 | 3:1,758,605-1,759,731 | - | C1H3g16924 | C2H3g04770 | LOC_Os03g04220 | Os03g0134900 | - | Detail |
| CX3g030799 | 3:1,773,686-1,776,211 | - | C1H3g07565 | C2H3g10421 | LOC_Os03g04270 | Os03g0135400 | - | Detail |
| CX3g027511 | 3:1,781,948-1,782,169 | + | - | - | - | Os03g0135550 | - | Detail |
| CX3g031179 | 3:1,783,426-1,783,599 | + | - | - | - | - | - | Detail |
| CX3g025620 | 3:1,787,958-1,790,688 | - | C1H3g05387 | C2H3g21011 | LOC_Os03g04300 | Os03g0135600 | - | Detail |
| CX3g028533 | 3:1,795,096-1,796,703 | - | C1H3g28124 | C2H3g13535 | LOC_Os03g04310 | Os03g0135700 | - | Detail |
| CX3g025482 | 3:1,802,095-1,802,337 | + | - | - | - | - | - | Detail |
| CX3g028470 | 3:1,813,824-1,814,915 | + | C1H3g26367 | C2H3g08967 | LOC_Os03g04340 | Os03g0136200 | - | Detail |
| CX3g025886 | 3:1,821,864-1,823,444 | - | C1H3g15385 | C2H3g15188 | LOC_Os03g04360 | Os03g0136400 | OsPHT1;7 | Detail |
| CX3g030982 | 3:1,824,986-1,825,468 | + | C1H3g07268 | C2H3g18976 | LOC_Os03g04380 | Os03g0136600 | - | Detail |
| CX3g031134 | 3:1,826,034-1,828,382 | - | C1H3g01856 | C2H3g17961 | LOC_Os03g04390 | Os03g0136700 | OsPGL3A | Detail |
| CX3g026091 | 3:1,829,450-1,832,363 | - | C1H3g19390 | C2H3g24395 | LOC_Os03g04400 | Os03g0136800 | - | Detail |
| CX3g026194 | 3:1,833,903-1,840,298 | - | C1H3g26141 | C2H3g13274 | LOC_Os03g04410 | Os03g0136900 | - | Detail |
| CX3g025161 | 3:1,856,768-1,859,033 | + | C1H3g09324 | C2H3g10382 | LOC_Os03g04430 | Os03g0137200 | - | Detail |
| CX3g030835 | 3:1,860,399-1,863,559 | - | C1H3g24578 | C2H3g08269 | LOC_Os03g04440 | Os03g0137300 | - | Detail |
| CX3g030190 | 3:1,865,997-1,873,889 | + | C1H3g23115 | C2H3g22036 | LOC_Os03g04450 | Os03g0137400 | - | Detail |
| CX3g030394 | 3:1,874,828-1,875,978 | + | C1H3g17292 | C2H3g01834 | LOC_Os03g04470 | Os03g0137600 | - | Detail |
| CX3g026460 | 3:1,877,438-1,879,310 | - | C1H3g01548 | C2H3g03162 | LOC_Os03g04480 | Os03g0137700 | - | Detail |
| CX3g029178 | 3:1,890,045-1,892,963 | + | C1H3g28742 | C2H3g00922 | LOC_Os03g04490 | Os03g0137800 | KRP5 | Detail |
| CX3g025834 | 3:1,898,070-1,898,264 | - | - | - | - | - | - | Detail |