| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16281 | 3:23,985,910-23,987,995 | - | C1H3g29144 | CX3g031226 | LOC_Os03g46100 | Os03g0663800 | FLOC1 | Detail |
| C2H3g05304 | 3:23,989,142-23,991,540 | - | C1H3g10937 | CX3g026799 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| C2H3g13262 | 3:23,992,868-23,994,346 | + | C1H3g22844 | CX3g027937 | LOC_Os03g46140 | Os03g0664300 | - | Detail |
| C2H3g25255 | 3:24,000,869-24,001,651 | + | C1H3g05960 | CX3g026593 | LOC_Os03g46180 | Os03g0664600 | - | Detail |
| C2H3g30526 | 3:24,001,282-24,005,186 | - | C1H3g08349 | CX3g028782 | LOC_Os03g46190 | Os03g0664700 | - | Detail |
| C2H3g29200 | 3:24,013,612-24,014,551 | + | C1H3g19227 | CX3g028453 | LOC_Os03g46250 | Os03g0665000 | - | Detail |
| C2H3g13481 | 3:24,016,566-24,019,878 | - | C1H3g03624 | CX3g028439 | LOC_Os03g46260 | Os03g0665200 | OsFLZ11 | Detail |
| C2H3g17717 | 3:24,050,392-24,056,147 | - | C1H3g03137 | CX3g025719 | LOC_Os07g15160 | Os01g0646700 | - | Detail |
| C2H3g02010 | 3:24,058,754-24,061,638 | + | C1H3g02596 | CX3g030454 | LOC_Os03g46310 | Os03g0665800 | - | Detail |
| C2H3g24958 | 3:24,066,283-24,073,307 | + | C1H3g06192 | CX3g030422 | LOC_Os03g46330 | Os03g0666100 | - | Detail |
| C2H3g06923 | 3:24,073,389-24,077,239 | - | C1H3g26270 | CX3g025831 | LOC_Os03g46340 | Os03g0666200 | OsSWAP70A | Detail |
| C2H3g08439 | 3:24,082,106-24,083,234 | + | C1H3g10336 | CX3g029931 | LOC_Os03g46350 | Os03g0666300 | - | Detail |
| C2H3g02623 | 3:24,094,827-24,101,069 | + | C1H3g03788 | CX3g027340 | LOC_Os03g46390 | Os03g0666500 | - | Detail |
| C2H3g22843 | 3:24,101,688-24,104,287 | - | C1H3g03865 | CX3g026425 | LOC_Os03g46410 | Os03g0666700 | - | Detail |
| C2H3g09706 | 3:24,114,313-24,117,941 | - | C1H3g13561 | CX3g026086 | LOC_Os03g46440 | Os03g0667100 | - | Detail |
| C2H3g16749 | 3:24,122,410-24,123,614 | - | C1H3g09851 | CX3g030979 | LOC_Os03g46454 | Os03g0667300 | OsIRT2 | Detail |
| C2H3g11751 | 3:24,131,253-24,136,055 | - | C1H3g21913 | CX3g025528 | LOC_Os03g46470 | Os03g0667500 | OsIRT1 | Detail |
| C2H3g12375 | 3:24,137,797-24,143,096 | - | C1H3g14101 | CX3g026005 | LOC_Os03g46480 | Os03g0667700 | - | Detail |
| C2H3g21545 | 3:24,156,214-24,157,683 | + | C1H3g27711 | CX3g025010 | LOC_Os03g46510 | Os03g0668000 | - | Detail |
| C2H3g00299 | 3:24,163,659-24,165,337 | + | C1H3g30467 | CX3g030801 | LOC_Os03g46530 | Os03g0668000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027794 | 3:1,387,441-1,392,151 | - | C1H3g30951 | C2H3g22731 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| CX3g029550 | 3:1,395,009-1,398,073 | + | C1H3g04194 | C2H3g10932 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| CX3g028222 | 3:1,401,881-1,409,024 | - | C1H3g21101 | C2H3g19343 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| CX3g029732 | 3:1,412,735-1,413,940 | + | C1H3g15997 | C2H3g04515 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| CX3g027243 | 3:1,415,771-1,430,717 | - | C1H3g11304 | C2H3g21656 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| CX3g025297 | 3:1,441,160-1,441,727 | - | C1H3g22245 | C2H3g11243 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| CX3g025997 | 3:1,442,449-1,442,601 | - | - | - | - | - | - | Detail |
| CX3g029085 | 3:1,443,168-1,444,380 | - | C1H3g27628 | C2H3g19615 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| CX3g029868 | 3:1,445,201-1,448,976 | - | C1H3g25549 | C2H3g24976 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| CX3g025176 | 3:1,451,371-1,451,832 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g027339 | 3:1,461,140-1,464,275 | + | C1H3g29800 | C2H3g12077 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| CX3g030927 | 3:1,465,307-1,466,579 | - | C1H3g05509 | C2H3g19950 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| CX3g026694 | 3:1,467,005-1,472,758 | + | C1H3g30034 | C2H3g30344 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| CX3g026791 | 3:1,477,575-1,479,854 | + | C1H3g26756 | C2H3g21860 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| CX3g030210 | 3:1,480,420-1,483,726 | - | C1H3g08238 | C2H3g23213 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| CX3g028820 | 3:1,488,673-1,496,609 | - | C1H3g14096 | C2H3g26117 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| CX3g028073 | 3:1,497,397-1,500,405 | + | C1H3g27982 | C2H3g26797 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| CX3g030443 | 3:1,502,389-1,502,801 | + | C1H3g08454 | C2H3g27426 | - | Os03g0129400 | - | Detail |
| CX3g026210 | 3:1,503,125-1,505,760 | - | C1H3g20373 | C2H3g07876 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| CX3g026524 | 3:1,507,187-1,511,986 | - | C1H3g14716 | C2H3g13057 | LOC_Os03g03760 | Os03g0624000 | - | Detail |