| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g04414 | 1:11,130,938-11,132,486 | + | C2H1g11900 | - | - | - | - | Detail |
| C1H1g24035 | 1:11,134,390-11,135,292 | - | C2H1g09100 | CX1g001954 | LOC_Os01g22570 | Os01g0329000 | - | Detail |
| C1H1g22940 | 1:11,156,748-11,159,323 | + | C2H1g05958 | CX1g001596 | LOC_Os01g22590 | Os01g0329300 | - | Detail |
| C1H1g12319 | 1:11,159,676-11,165,731 | - | C2H1g26866 | CX1g000240 | LOC_Os01g22600 | Os01g0329400 | - | Detail |
| C1H1g03998 | 1:11,171,500-11,177,206 | + | C2H1g27428 | CX1g004633 | LOC_Os01g22630 | Os01g0329800 | - | Detail |
| C1H1g30338 | 1:11,181,068-11,181,580 | + | C2H1g01944 | CX1g006655 | LOC_Os01g22640 | Os01g0329900 | - | Detail |
| C1H1g12639 | 1:11,182,471-11,184,477 | + | C2H1g01944 | CX1g006655 | LOC_Os01g22640 | Os01g0329900 | - | Detail |
| C1H1g19397 | 1:11,198,061-11,201,521 | + | C2H1g06794 | CX1g007268 | LOC_Os01g22660 | Os01g0330100 | - | Detail |
| C1H1g03743 | 1:11,201,584-11,203,108 | - | C2H1g22823 | CX1g006180 | LOC_Os01g22670 | Os01g0330200 | - | Detail |
| C1H1g15782 | 1:11,206,647-11,207,843 | + | C2H1g15539 | CX1g005713 | LOC_Os01g22680 | Os01g0347500 | - | Detail |
| C1H1g14705 | 1:11,239,365-11,239,742 | + | C2H1g24217 | CX1g004068 | LOC_Os01g22780 | Os01g0331100 | - | Detail |
| C1H1g09878 | 1:11,243,065-11,244,522 | + | C2H1g06111 | CX1g004068 | LOC_Os01g22780 | Os01g0331100 | - | Detail |
| C1H1g18229 | 1:11,254,481-11,258,659 | + | C2H1g00150 | CX1g001443 | LOC_Os01g22870 | Os01g0331900 | - | Detail |
| C1H1g29292 | 1:11,270,176-11,274,225 | + | C2H1g27905 | CX1g005311 | LOC_Os01g22900 | Os01g0332100 | - | Detail |
| C1H1g15812 | 1:11,275,564-11,277,738 | - | C2H1g02015 | CX1g005606 | LOC_Os01g22910 | Os01g0332200 | GA2OX2, OsGA2ox2, ga2ox 2, OsGA2ox-2 | Detail |
| C1H1g31043 | 1:11,283,396-11,284,474 | - | C2H1g12678 | CX1g005606 | LOC_Os01g22920 | Os01g0332200 | GA2OX2, OsGA2ox2, ga2ox 2, OsGA2ox-2 | Detail |
| C1H1g25028 | 1:11,295,061-11,297,671 | + | C2H1g25435 | CX1g006261 | LOC_Os01g22954 | Os01g0332500 | - | Detail |
| C1H1g00421 | 1:11,307,290-11,308,319 | + | C2H1g11384 | CX1g005436 | LOC_Os01g22954 | Os01g0332500 | - | Detail |
| C1H1g09638 | 1:11,308,851-11,312,333 | - | C2H1g19970 | CX1g005436 | LOC_Os01g22980 | Os01g0332800 | - | Detail |
| C1H1g01670 | 1:11,315,158-11,318,039 | - | C2H1g05656 | CX1g002203 | LOC_Os01g22990 | Os01g0332900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027794 | 3:1,387,441-1,392,151 | - | C1H3g30951 | C2H3g22731 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| CX3g029550 | 3:1,395,009-1,398,073 | + | C1H3g04194 | C2H3g10932 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| CX3g028222 | 3:1,401,881-1,409,024 | - | C1H3g21101 | C2H3g19343 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| CX3g029732 | 3:1,412,735-1,413,940 | + | C1H3g15997 | C2H3g04515 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| CX3g027243 | 3:1,415,771-1,430,717 | - | C1H3g11304 | C2H3g21656 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| CX3g025297 | 3:1,441,160-1,441,727 | - | C1H3g22245 | C2H3g11243 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| CX3g025997 | 3:1,442,449-1,442,601 | - | - | - | - | - | - | Detail |
| CX3g029085 | 3:1,443,168-1,444,380 | - | C1H3g27628 | C2H3g19615 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| CX3g029868 | 3:1,445,201-1,448,976 | - | C1H3g25549 | C2H3g24976 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| CX3g025176 | 3:1,451,371-1,451,832 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g027339 | 3:1,461,140-1,464,275 | + | C1H3g29800 | C2H3g12077 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| CX3g030927 | 3:1,465,307-1,466,579 | - | C1H3g05509 | C2H3g19950 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| CX3g026694 | 3:1,467,005-1,472,758 | + | C1H3g30034 | C2H3g30344 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| CX3g026791 | 3:1,477,575-1,479,854 | + | C1H3g26756 | C2H3g21860 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| CX3g030210 | 3:1,480,420-1,483,726 | - | C1H3g08238 | C2H3g23213 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| CX3g028820 | 3:1,488,673-1,496,609 | - | C1H3g14096 | C2H3g26117 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| CX3g028073 | 3:1,497,397-1,500,405 | + | C1H3g27982 | C2H3g26797 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| CX3g030443 | 3:1,502,389-1,502,801 | + | C1H3g08454 | C2H3g27426 | - | Os03g0129400 | - | Detail |
| CX3g026210 | 3:1,503,125-1,505,760 | - | C1H3g20373 | C2H3g07876 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| CX3g026524 | 3:1,507,187-1,511,986 | - | C1H3g14716 | C2H3g13057 | LOC_Os03g03760 | Os03g0624000 | - | Detail |