| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04003 | 2:27,477,941-27,478,566 | - | C2H2g26609 | CX2g023306 | LOC_Os02g48820 | Os02g0720100 | - | Detail |
| C1H2g28119 | 2:27,479,305-27,483,451 | + | C2H2g17849 | CX2g022662 | LOC_Os02g48830 | Os02g0720200 | - | Detail |
| C1H2g04549 | 2:27,484,204-27,486,971 | + | C2H2g12963 | CX2g023752 | LOC_Os02g48840 | Os02g0720300 | - | Detail |
| C1H2g03370 | 2:27,488,401-27,490,404 | + | C2H2g12542 | CX2g018926 | LOC_Os02g48850 | Os02g0720400 | - | Detail |
| C1H2g06652 | 2:27,491,276-27,493,421 | + | C2H2g09168 | CX2g020411 | LOC_Os02g48860 | Os02g0720500 | - | Detail |
| C1H2g20338 | 2:27,494,695-27,496,503 | - | C2H2g25224 | CX2g020891 | LOC_Os02g48870 | Os02g0720600 | - | Detail |
| C1H2g31471 | 2:27,502,503-27,507,749 | - | - | CX2g023341 | LOC_Os02g48880 | Os02g0720700 | - | Detail |
| C1H2g28436 | 2:27,512,345-27,517,322 | + | C2H2g25425 | CX2g021948 | LOC_Os02g48900 | Os02g0720900 | - | Detail |
| C1H2g09094 | 2:27,521,081-27,521,911 | - | C2H2g11386 | CX2g024396 | LOC_Os02g48910 | Os02g0721100 | - | Detail |
| C1H2g12153 | 2:27,523,601-27,524,627 | - | C2H2g09000 | CX2g021720 | LOC_Os02g48920 | Os02g0721200 | - | Detail |
| C1H2g23667 | 2:27,526,738-27,527,974 | - | C2H2g01560 | CX2g021720 | LOC_Os02g48950 | Os02g0721100 | - | Detail |
| C1H2g21993 | 2:27,528,607-27,535,776 | - | C2H2g23285 | - | LOC_Os02g48964 | Os02g0721600 | - | Detail |
| C1H2g06282 | 2:27,539,621-27,541,699 | - | C2H2g14813 | CX2g023863 | LOC_Os02g48980 | Os02g0721700 | - | Detail |
| C1H2g28541 | 2:27,542,875-27,548,996 | - | C2H2g03395 | CX2g019956 | LOC_Os02g48990 | Os02g0721800 | OsSec14-9 | Detail |
| C1H2g27760 | 2:27,551,022-27,556,426 | - | C2H2g05054 | CX2g018869 | LOC_Os02g49030 | Os02g0722001 | - | Detail |
| C1H2g15238 | 2:27,558,083-27,561,361 | + | C2H2g07315 | CX2g022151 | LOC_Os02g49050 | Os02g0722300 | - | Detail |
| C1H2g27060 | 2:27,565,359-27,571,809 | + | C2H2g28450 | CX2g020972 | LOC_Os02g49060 | Os02g0722400 | - | Detail |
| C1H2g28181 | 2:27,572,199-27,578,999 | - | C2H2g03918 | CX2g019945 | LOC_Os02g49070 | Os02g0722500 | - | Detail |
| C1H2g28597 | 2:27,587,417-27,592,011 | + | C2H2g17328 | CX2g020919 | LOC_Os02g49080 | Os02g0722700 | - | Detail |
| C1H2g02362 | 2:27,593,049-27,602,316 | - | C2H2g17496 | CX2g020883 | LOC_Os02g49090 | Os02g0722800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g027794 | 3:1,387,441-1,392,151 | - | C1H3g30951 | C2H3g22731 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| CX3g029550 | 3:1,395,009-1,398,073 | + | C1H3g04194 | C2H3g10932 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| CX3g028222 | 3:1,401,881-1,409,024 | - | C1H3g21101 | C2H3g19343 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| CX3g029732 | 3:1,412,735-1,413,940 | + | C1H3g15997 | C2H3g04515 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| CX3g027243 | 3:1,415,771-1,430,717 | - | C1H3g11304 | C2H3g21656 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| CX3g025297 | 3:1,441,160-1,441,727 | - | C1H3g22245 | C2H3g11243 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| CX3g025997 | 3:1,442,449-1,442,601 | - | - | - | - | - | - | Detail |
| CX3g029085 | 3:1,443,168-1,444,380 | - | C1H3g27628 | C2H3g19615 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| CX3g029868 | 3:1,445,201-1,448,976 | - | C1H3g25549 | C2H3g24976 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| CX3g025176 | 3:1,451,371-1,451,832 | + | - | - | LOC_Os09g39130 | Os09g0564800 | - | Detail |
| CX3g027339 | 3:1,461,140-1,464,275 | + | C1H3g29800 | C2H3g12077 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| CX3g030927 | 3:1,465,307-1,466,579 | - | C1H3g05509 | C2H3g19950 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| CX3g026694 | 3:1,467,005-1,472,758 | + | C1H3g30034 | C2H3g30344 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| CX3g026791 | 3:1,477,575-1,479,854 | + | C1H3g26756 | C2H3g21860 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| CX3g030210 | 3:1,480,420-1,483,726 | - | C1H3g08238 | C2H3g23213 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| CX3g028820 | 3:1,488,673-1,496,609 | - | C1H3g14096 | C2H3g26117 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| CX3g028073 | 3:1,497,397-1,500,405 | + | C1H3g27982 | C2H3g26797 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| CX3g030443 | 3:1,502,389-1,502,801 | + | C1H3g08454 | C2H3g27426 | - | Os03g0129400 | - | Detail |
| CX3g026210 | 3:1,503,125-1,505,760 | - | C1H3g20373 | C2H3g07876 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| CX3g026524 | 3:1,507,187-1,511,986 | - | C1H3g14716 | C2H3g13057 | LOC_Os03g03760 | Os03g0624000 | - | Detail |