| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g00064 | 5:1,606,398-1,609,211 | - | C2H5g12807 | CX5g041042 | LOC_Os05g04120 | Os05g0131500 | - | Detail |
| C1H5g06759 | 5:1,611,813-1,615,448 | - | C2H5g15022 | CX5g037262 | - | - | - | Detail |
| C1H5g22859 | 5:1,625,325-1,628,837 | + | C2H5g11311 | CX5g040539 | LOC_Os05g04150 | Os05g0131900 | - | Detail |
| C1H5g07219 | 5:1,630,458-1,637,540 | + | C2H5g00026 | CX5g038241 | LOC_Os05g04160 | Os05g0132000 | - | Detail |
| C1H5g01586 | 5:1,632,871-1,639,170 | - | C2H5g29271 | CX5g039267 | LOC_Os05g04170 | Os05g0132100 | - | Detail |
| C1H5g04909 | 5:1,650,474-1,650,692 | + | C2H5g16493 | - | - | - | - | Detail |
| C1H5g08013 | 5:1,653,259-1,657,297 | - | C2H5g30600 | CX5g040727 | LOC_Os05g04180 | Os05g0132400 | - | Detail |
| C1H5g03405 | 5:1,657,922-1,663,594 | - | C2H5g03082 | CX5g039156 | LOC_Os05g04190 | Os05g0132500 | - | Detail |
| C1H5g18309 | 5:1,676,531-1,677,946 | - | C2H5g05589 | CX5g037816 | LOC_Os05g04210 | Os05g0132700 | Os2R_MYB52 | Detail |
| C1H5g29537 | 5:1,702,580-1,705,557 | - | C2H5g27002 | CX5g038861 | LOC_Os05g04220 | Os05g0133100 | - | Detail |
| C1H5g10914 | 5:1,709,874-1,711,433 | + | C2H5g26178 | CX5g036771 | LOC_Os05g04240 | Os05g0133401 | - | Detail |
| C1H5g20409 | 5:1,715,482-1,725,999 | + | C2H5g08606 | CX5g039957 | LOC_Os05g04330 | Os05g0133900 | - | Detail |
| C1H5g02098 | 5:1,726,300-1,730,116 | - | C2H5g20537 | CX5g040252 | LOC_Os05g04340 | Os05g0134000 | OsSK13 | Detail |
| C1H5g20836 | 5:1,738,427-1,740,605 | + | C2H5g03032 | CX5g038101 | LOC_Os05g04360 | Os05g0134200 | - | Detail |
| C1H5g08049 | 5:1,741,821-1,746,478 | - | C2H5g30196 | CX5g040147 | LOC_Os05g04370 | Os05g0134300 | - | Detail |
| C1H5g14884 | 5:1,753,616-1,758,432 | + | C2H5g13007 | CX5g038822 | LOC_Os05g04380 | Os05g0134400 | - | Detail |
| C1H5g26531 | 5:1,767,133-1,769,067 | + | C2H5g21653 | CX5g038822 | LOC_Os05g04410 | Os05g0134700 | - | Detail |
| C1H5g31364 | 5:1,783,505-1,784,695 | + | C2H5g26476 | CX5g038822 | LOC_Os05g04440 | Os05g0134800 | - | Detail |
| C1H5g25410 | 5:1,789,023-1,790,370 | + | C2H5g21523 | CX5g038822 | LOC_Os05g04450 | Os05g0135000 | - | Detail |
| C1H5g19346 | 5:1,794,034-1,796,472 | - | C2H5g03728 | CX5g040620 | LOC_Os05g04460 | Os05g0135100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029772 | 3:472,972-474,839 | + | C1H3g22432 | C2H3g24553 | LOC_Os03g02020 | Os03g0110900 | - | Detail |
| CX3g026287 | 3:476,109-476,360 | - | - | - | - | Os03g0111000 | - | Detail |
| CX3g026446 | 3:477,347-481,959 | - | C1H3g02926 | C2H3g02060 | LOC_Os03g02030 | Os03g0111100 | - | Detail |
| CX3g031029 | 3:483,696-485,925 | - | C1H3g26294 | C2H3g10416 | LOC_Os03g02040 | Os03g0111200 | - | Detail |
| CX3g030230 | 3:489,039-489,335 | - | C1H3g15608 | C2H3g28715 | LOC_Os03g02050 | Os03g0111300 | - | Detail |
| CX3g026627 | 3:496,010-499,016 | - | C1H3g30842 | C2H3g08607 | LOC_Os03g02070 | Os03g0111400 | - | Detail |
| CX3g026803 | 3:506,595-507,240 | + | C1H3g12626 | C2H3g00134 | LOC_Os03g21740 | Os03g0111700 | - | Detail |
| CX3g029357 | 3:507,693-510,725 | + | C1H3g17498 | - | LOC_Os03g21600 | Os03g0333800 | - | Detail |
| CX3g029370 | 3:515,319-515,615 | - | - | - | - | Os10g0516250 | - | Detail |
| CX3g026774 | 3:521,747-523,112 | - | C1H3g02748 | - | - | - | - | Detail |
| CX3g028405 | 3:524,229-526,002 | - | C1H3g02748 | C2H3g30326 | - | - | - | Detail |
| CX3g030313 | 3:537,104-539,235 | + | C1H3g18662 | - | LOC_Os03g02080 | Os03g0111500 | - | Detail |
| CX3g030989 | 3:542,579-548,601 | - | C1H3g03993 | C2H3g23362 | LOC_Os03g02090 | Os03g0111600 | - | Detail |
| CX3g029050 | 3:549,717-555,646 | + | C1H3g29372 | C2H3g00134 | LOC_Os03g02100 | Os03g0694900 | - | Detail |
| CX3g028048 | 3:557,757-564,226 | + | C1H3g12244 | C2H3g12317 | LOC_Os03g02110 | Os03g0111800 | - | Detail |
| CX3g026996 | 3:567,625-576,486 | + | C1H3g07282 | C2H3g29148 | LOC_Os03g02150 | Os03g0112101 | - | Detail |
| CX3g029929 | 3:580,861-588,744 | + | C1H3g30522 | C2H3g00838 | LOC_Os03g02160 | Os03g0112700 | EHD4, OsC3H20, C3H20, Ehd4 | Detail |
| CX3g030050 | 3:590,160-594,055 | - | C1H3g07238 | C2H3g27881 | LOC_Os03g02170 | Os03g0112800 | STS1 | Detail |
| CX3g030634 | 3:594,768-596,405 | - | C1H3g09620 | C2H3g26177 | LOC_Os03g02180 | Os03g0112900 | OsF5HL2 | Detail |
| CX3g025594 | 3:600,580-600,822 | - | - | - | - | Os11g0474000 | - | Detail |