| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g28511 | 3:29,678,395-29,684,235 | + | C2H3g01139 | CX3g026186 | LOC_Os03g55760 | Os03g0766500 | - | Detail |
| C1H3g11551 | 3:29,687,040-29,690,346 | + | C2H3g02791 | CX3g026597 | LOC_Os03g55784 | Os03g0766900 | - | Detail |
| C1H3g16165 | 3:29,702,028-29,705,343 | - | C2H3g02036 | CX3g026749 | LOC_Os03g55820 | Os03g0767500 | - | Detail |
| C1H3g20103 | 3:29,709,048-29,710,559 | + | C2H3g17261 | - | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g10730 | 3:29,710,969-29,712,911 | + | C2H3g25481 | CX3g027804 | LOC_Os03g55830 | Os03g0767600 | - | Detail |
| C1H3g31861 | 3:29,715,687-29,718,113 | + | C2H3g21501 | CX3g028593 | LOC_Os03g55850 | Os03g0767800 | - | Detail |
| C1H3g14127 | 3:29,719,059-29,719,939 | + | C2H3g01498 | CX3g024946 | LOC_Os03g55870 | Os03g0767900 | - | Detail |
| C1H3g26336 | 3:29,727,918-29,732,100 | - | C2H3g08266 | CX3g028693 | LOC_Os03g55890 | Os03g0769000 | - | Detail |
| C1H3g24628 | 3:29,739,501-29,744,230 | - | C2H3g19989 | CX3g027389 | LOC_Os03g55920 | Os03g0769050 | - | Detail |
| C1H3g25789 | 3:29,745,160-29,746,665 | - | C2H3g27533 | CX3g028168 | LOC_Os03g55930 | Os03g0769100 | - | Detail |
| C1H3g19145 | 3:29,754,537-29,758,327 | + | C2H3g12948 | CX3g028504 | LOC_Os03g55950 | Os03g0769400 | - | Detail |
| C1H3g25186 | 3:29,761,091-29,763,906 | - | C2H3g22257 | CX3g028565 | LOC_Os03g55970 | Os03g0769600 | - | Detail |
| C1H3g09664 | 3:29,781,351-29,781,905 | + | C2H3g01939 | CX3g028075 | LOC_Os03g56010 | Os03g0770000 | - | Detail |
| C1H3g00630 | 3:29,783,961-29,784,704 | + | - | - | - | - | - | Detail |
| C1H3g17718 | 3:29,792,098-29,793,860 | + | C2H3g30222 | CX3g030368 | LOC_Os03g56020 | Os03g0770100 | - | Detail |
| C1H3g16948 | 3:29,820,097-29,824,011 | + | C2H3g30157 | CX3g030242 | LOC_Os03g56050 | Os03g0770700 | - | Detail |
| C1H3g26645 | 3:29,826,799-29,830,856 | - | C2H3g09554 | CX3g030133 | LOC_Os03g56060 | Os03g0770800 | OsCSLC9 | Detail |
| C1H3g03394 | 3:29,839,102-29,841,454 | - | C2H3g10825 | CX3g029202 | LOC_Os03g56070 | Os03g0770900 | - | Detail |
| C1H3g11674 | 3:29,853,307-29,854,565 | - | C2H3g08836 | CX3g029828 | LOC_Os03g56090 | Os03g0771100 | OsMYB36c | Detail |
| C1H3g05785 | 3:29,865,263-29,870,473 | + | C2H3g08036 | CX3g025561 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX3g029772 | 3:472,972-474,839 | + | C1H3g22432 | C2H3g24553 | LOC_Os03g02020 | Os03g0110900 | - | Detail |
| CX3g026287 | 3:476,109-476,360 | - | - | - | - | Os03g0111000 | - | Detail |
| CX3g026446 | 3:477,347-481,959 | - | C1H3g02926 | C2H3g02060 | LOC_Os03g02030 | Os03g0111100 | - | Detail |
| CX3g031029 | 3:483,696-485,925 | - | C1H3g26294 | C2H3g10416 | LOC_Os03g02040 | Os03g0111200 | - | Detail |
| CX3g030230 | 3:489,039-489,335 | - | C1H3g15608 | C2H3g28715 | LOC_Os03g02050 | Os03g0111300 | - | Detail |
| CX3g026627 | 3:496,010-499,016 | - | C1H3g30842 | C2H3g08607 | LOC_Os03g02070 | Os03g0111400 | - | Detail |
| CX3g026803 | 3:506,595-507,240 | + | C1H3g12626 | C2H3g00134 | LOC_Os03g21740 | Os03g0111700 | - | Detail |
| CX3g029357 | 3:507,693-510,725 | + | C1H3g17498 | - | LOC_Os03g21600 | Os03g0333800 | - | Detail |
| CX3g029370 | 3:515,319-515,615 | - | - | - | - | Os10g0516250 | - | Detail |
| CX3g026774 | 3:521,747-523,112 | - | C1H3g02748 | - | - | - | - | Detail |
| CX3g028405 | 3:524,229-526,002 | - | C1H3g02748 | C2H3g30326 | - | - | - | Detail |
| CX3g030313 | 3:537,104-539,235 | + | C1H3g18662 | - | LOC_Os03g02080 | Os03g0111500 | - | Detail |
| CX3g030989 | 3:542,579-548,601 | - | C1H3g03993 | C2H3g23362 | LOC_Os03g02090 | Os03g0111600 | - | Detail |
| CX3g029050 | 3:549,717-555,646 | + | C1H3g29372 | C2H3g00134 | LOC_Os03g02100 | Os03g0694900 | - | Detail |
| CX3g028048 | 3:557,757-564,226 | + | C1H3g12244 | C2H3g12317 | LOC_Os03g02110 | Os03g0111800 | - | Detail |
| CX3g026996 | 3:567,625-576,486 | + | C1H3g07282 | C2H3g29148 | LOC_Os03g02150 | Os03g0112101 | - | Detail |
| CX3g029929 | 3:580,861-588,744 | + | C1H3g30522 | C2H3g00838 | LOC_Os03g02160 | Os03g0112700 | EHD4, OsC3H20, C3H20, Ehd4 | Detail |
| CX3g030050 | 3:590,160-594,055 | - | C1H3g07238 | C2H3g27881 | LOC_Os03g02170 | Os03g0112800 | STS1 | Detail |
| CX3g030634 | 3:594,768-596,405 | - | C1H3g09620 | C2H3g26177 | LOC_Os03g02180 | Os03g0112900 | OsF5HL2 | Detail |
| CX3g025594 | 3:600,580-600,822 | - | - | - | - | Os11g0474000 | - | Detail |