| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02805 | 3:8,495,411-8,498,787 | + | C2H3g19709 | CX3g031048 | LOC_Os03g17240 | Os03g0281000 | - | Detail |
| C1H3g19384 | 3:8,501,589-8,503,927 | + | C2H3g01163 | CX3g028226 | LOC_Os03g17250 | Os03g0281100 | - | Detail |
| C1H3g05247 | 3:8,508,143-8,509,087 | - | C2H3g30239 | CX3g026165 | LOC_Os03g17260 | Os03g0281201 | - | Detail |
| C1H3g09869 | 3:8,510,401-8,517,214 | - | C2H3g10844 | CX3g025004 | LOC_Os03g17270 | Os03g0281300 | - | Detail |
| C1H3g20489 | 3:8,518,066-8,520,873 | - | C2H3g22572 | CX3g030681 | LOC_Os03g14100 | Os03g0378500 | Os2R_MYB37 | Detail |
| C1H3g05953 | 3:8,528,301-8,530,820 | + | C2H3g23238 | CX3g030928 | LOC_Os03g17300 | Os03g0281500 | OsCrRLK1L7 | Detail |
| C1H3g23808 | 3:8,531,055-8,537,416 | - | C2H3g13223 | CX3g030523 | LOC_Os03g17310 | Os03g0281600 | OsECA1 | Detail |
| C1H3g08368 | 3:8,542,023-8,546,702 | - | C2H3g28841 | CX3g026907 | LOC_Os03g17340 | Os03g0281800 | - | Detail |
| C1H3g04312 | 3:8,549,633-8,551,996 | + | C2H3g02883 | CX3g027101 | LOC_Os03g17350 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C1H3g07058 | 3:8,557,281-8,559,581 | + | C2H3g04384 | CX3g025177 | LOC_Os03g17370 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C1H3g16432 | 3:8,567,232-8,573,375 | - | - | CX3g026382 | LOC_Os03g17410 | Os03g0282232 | - | Detail |
| C1H3g15208 | 3:8,591,799-8,593,016 | + | C2H3g12675 | CX3g027572 | LOC_Os03g17432 | Os03g0282700 | - | Detail |
| C1H3g13015 | 3:8,593,398-8,595,902 | - | C2H3g17220 | CX3g026586 | LOC_Os03g17440 | Os03g0282800 | - | Detail |
| C1H3g25350 | 3:8,596,431-8,600,838 | + | C2H3g11550 | CX3g027144 | LOC_Os03g17450 | Os03g0282900 | - | Detail |
| C1H3g12499 | 3:8,600,406-8,605,326 | - | C2H3g03924 | CX3g029922 | LOC_Os03g17470 | Os03g0283100 | - | Detail |
| C1H3g23272 | 3:8,607,231-8,611,124 | - | C2H5g03493 | CX3g030233 | LOC_Os07g15980 | Os05g0193800 | - | Detail |
| C1H3g00300 | 3:8,616,097-8,616,946 | - | - | - | - | - | - | Detail |
| C1H3g26286 | 3:8,619,041-8,621,151 | - | C2H3g13775 | CX3g029922 | LOC_Os03g17480 | Os03g0283200 | - | Detail |
| C1H3g04825 | 3:8,622,727-8,625,392 | + | C2H3g16412 | CX3g025299 | LOC_Os03g17490 | Os03g0283300 | - | Detail |
| C1H3g31389 | 3:8,626,250-8,628,390 | - | C2H3g25427 | CX3g029292 | LOC_Os03g17500 | Os03g0283400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023560 | 2:31,549,950-31,551,473 | - | C1H2g25927 | C2H2g09964 | LOC_Os02g56480 | Os02g0809100 | - | Detail |
| CX2g022889 | 2:31,559,084-31,559,389 | - | - | - | LOC_Os02g56490 | Os02g0809300 | - | Detail |
| CX2g020953 | 2:31,568,379-31,570,966 | + | C1H2g03941 | C2H2g05475 | LOC_Os02g56500 | Os02g0809500 | OsSEC24 | Detail |
| CX2g019941 | 2:31,581,811-31,583,210 | + | C1H2g08370 | C2H2g26800 | LOC_Os02g56510 | Os02g0809800 | PHO1;2, OsPHO1;2 | Detail |
| CX2g019552 | 2:31,583,833-31,586,613 | + | C1H2g08370 | C2H2g26800 | LOC_Os02g56510 | Os02g0809800 | PHO1;2, OsPHO1;2 | Detail |
| CX2g021231 | 2:31,587,232-31,590,653 | - | C1H2g13536 | C2H2g22393 | LOC_Os02g56520 | Os02g0809900 | - | Detail |
| CX2g020383 | 2:31,592,128-31,595,580 | - | C1H2g21189 | C2H2g05657 | LOC_Os02g56530 | Os02g0810100 | - | Detail |
| CX2g023309 | 2:31,601,476-31,605,694 | + | C1H2g07640 | C2H2g09102 | LOC_Os02g56540 | Os02g0810200 | STD1 | Detail |
| CX2g021152 | 2:31,606,549-31,609,467 | + | C1H2g31061 | C2H2g09184 | LOC_Os02g56550 | Os02g0810300 | OsABCI15 | Detail |
| CX2g023904 | 2:31,613,992-31,617,281 | + | C1H2g29463 | C2H2g08532 | LOC_Os02g56560 | Os02g0810400 | - | Detail |
| CX2g021566 | 2:31,618,376-31,622,006 | + | C1H2g29463 | C2H2g08532 | LOC_Os02g56565 | Os02g0810450 | - | Detail |
| CX2g022596 | 2:31,623,172-31,626,898 | + | C1H2g17936 | C2H2g16022 | LOC_Os02g56570 | Os02g0810500 | - | Detail |
| CX2g024714 | 2:31,634,023-31,634,520 | + | C1H2g20971 | C2H2g16022 | LOC_Os02g56580 | Os02g0810600 | - | Detail |
| CX2g020604 | 2:31,647,858-31,650,165 | + | C1H2g28748 | C2H2g20484 | LOC_Os02g56600 | Os02g0810900 | - | Detail |
| CX2g020290 | 2:31,663,618-31,664,235 | - | - | C2H2g16539 | LOC_Os02g56610 | Os02g0811000 | G1L6, AFD1, OsG1L6, TH1 | Detail |
| CX2g020564 | 2:31,688,148-31,689,254 | + | C1H2g13515 | C2H2g07924 | LOC_Os02g56370 | Os02g0807800 | - | Detail |
| CX2g022097 | 2:31,693,848-31,694,756 | + | C1H2g25312 | C2H2g21237 | LOC_Os02g56380 | Os02g0808100 | - | Detail |
| CX2g019099 | 2:31,727,023-31,729,525 | + | C1H2g25312 | C2H2g04085 | LOC_Os02g56630 | Os02g0811200 | - | Detail |
| CX2g024895 | 2:31,738,341-31,739,753 | + | C1H2g05066 | C2H2g14829 | LOC_Os02g56680 | Os02g0811400 | - | Detail |
| CX2g022856 | 2:31,744,268-31,745,724 | + | C1H2g24089 | C2H2g21626 | LOC_Os02g56690 | Os02g0811800 | OsCCR10 | Detail |