| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g31060 | 4:9,981,427-9,988,469 | - | C2H4g17225 | CX4g031399 | LOC_Os04g21660 | Os04g0284600 | - | Detail |
| C1H4g08612 | 4:9,994,952-9,997,366 | - | C2H4g05089 | CX4g036320 | LOC_Os04g21710 | Os04g0284900 | - | Detail |
| C1H4g20758 | 4:10,003,717-10,006,045 | - | C2H4g20581 | - | - | - | - | Detail |
| C1H4g13734 | 4:10,010,659-10,011,154 | - | C2H4g20979 | CX4g036368 | - | - | - | Detail |
| C1H4g07976 | 4:10,085,788-10,087,495 | + | C2H4g21060 | CX4g033406 | LOC_Os04g21790 | Os04g0286300 | - | Detail |
| C1H4g11497 | 4:10,104,559-10,109,249 | + | C2H4g29131 | CX4g034311 | LOC_Os04g21790 | Os04g0286300 | - | Detail |
| C1H4g12762 | 4:10,117,168-10,118,090 | + | - | CX4g031808 | - | Os04g0286366 | - | Detail |
| C1H4g30101 | 4:10,125,468-10,128,266 | + | C2H4g08504 | CX4g035225 | LOC_Os04g21890 | Os04g0286900 | - | Detail |
| C1H4g26329 | 4:10,149,454-10,150,595 | + | C2H4g22174 | CX4g034268 | LOC_Os04g21950 | Os04g0287400 | WRKY51, OsWRKY51 | Detail |
| C1H4g05917 | 4:10,195,606-10,196,473 | - | C2H4g16248 | CX4g033258 | LOC_Os04g22080 | Os04g0288100 | - | Detail |
| C1H4g15397 | 4:10,376,448-10,380,092 | - | C2H4g26122 | CX4g034987 | - | Os04g0295500 | - | Detail |
| C1H4g06691 | 4:10,404,858-10,405,596 | + | - | - | - | - | - | Detail |
| C1H4g19803 | 4:10,407,432-10,409,019 | + | C2H4g30305 | CX4g033464 | - | Os04g0615900 | - | Detail |
| C1H4g01835 | 4:10,431,424-10,432,366 | - | C2H7g18198 | - | - | - | - | Detail |
| C1H4g02573 | 4:10,436,420-10,436,816 | - | C2H7g24974 | CX7g048152 | - | - | - | Detail |
| C1H4g27160 | 4:10,438,101-10,439,303 | - | C2H4g23043 | CX4g032513 | LOC_Os04g22120 | Os04g0288500 | - | Detail |
| C1H4g28277 | 4:10,442,054-10,443,538 | - | C2H4g29101 | CX4g032513 | LOC_Os04g22120 | Os04g0288500 | - | Detail |
| C1H4g23795 | 4:10,485,650-10,490,541 | + | C2H4g20140 | CX4g034060 | LOC_Os04g22240 | Os04g0289800 | - | Detail |
| C1H4g25540 | 4:10,536,375-10,542,259 | + | C2H4g28831 | CX4g032411 | LOC_Os04g22360 | Os04g0290800 | OsRUS1 | Detail |
| C1H4g12809 | 4:10,552,015-10,558,725 | + | C2H4g30508 | CX4g035342 | LOC_Os04g22380 | Os04g0291100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022088 | 2:30,504,739-30,508,625 | + | C1H2g17039 | C2H2g16691 | LOC_Os02g54590 | Os02g0787200 | - | Detail |
| CX2g019876 | 2:30,512,294-30,513,397 | - | C1H2g05581 | C2H2g16242 | LOC_Os02g54600 | Os02g0787300 | SMG1, OsMKK4, MKK4, OsMKK4/SMG1 | Detail |
| CX2g023310 | 2:30,528,086-30,529,745 | + | C1H2g05584 | C2H2g29050 | LOC_Os02g54624 | Os02g0787500 | - | Detail |
| CX2g020275 | 2:30,534,836-30,535,310 | + | C1H2g08821 | C2H2g29172 | - | - | - | Detail |
| CX2g024049 | 2:30,539,253-30,539,405 | + | - | - | - | - | - | Detail |
| CX2g019134 | 2:30,540,492-30,546,559 | + | C1H2g10849 | C2H2g09069 | LOC_Os02g54640 | Os02g0787600 | - | Detail |
| CX2g020090 | 2:30,548,048-30,555,092 | - | C1H2g10467 | C2H2g02130 | LOC_Os02g54650 | Os02g0787800 | - | Detail |
| CX2g023353 | 2:30,560,974-30,562,826 | + | C1H2g21285 | C2H2g22539 | LOC_Os02g54690 | Os02g0788300 | - | Detail |
| CX2g020480 | 2:30,563,683-30,565,451 | + | C1H2g03966 | C2H2g09842 | LOC_Os02g54700 | Os02g0788400 | - | Detail |
| CX2g024078 | 2:30,566,140-30,567,971 | - | C1H2g22475 | C2H2g24143 | LOC_Os02g54710 | Os02g0788500 | - | Detail |
| CX2g021585 | 2:30,568,858-30,569,514 | - | - | - | - | - | - | Detail |
| CX2g023832 | 2:30,571,114-30,571,290 | + | - | - | - | Os02g0188201 | - | Detail |
| CX2g019873 | 2:30,574,651-30,577,775 | - | C1H2g09302 | C2H2g15656 | LOC_Os02g54720 | Os02g0788600 | - | Detail |
| CX2g020788 | 2:30,583,648-30,589,411 | - | C1H2g25640 | C2H2g25995 | LOC_Os02g54730 | Os02g0788800 | - | Detail |
| CX2g023773 | 2:30,593,288-30,597,854 | - | C1H2g12627 | C2H2g28930 | LOC_Os02g54760 | Os02g0789100 | OsCNGC10 | Detail |
| CX2g023326 | 2:30,602,745-30,605,198 | - | C1H2g17369 | C2H2g03077 | LOC_Os02g54770 | Os02g0789400 | - | Detail |
| CX2g020292 | 2:30,605,551-30,608,252 | + | C1H2g16760 | C2H2g03583 | LOC_Os02g54780 | Os02g0789600 | - | Detail |
| CX2g023662 | 2:30,614,031-30,614,240 | + | - | - | - | - | - | Detail |
| CX2g019192 | 2:30,624,917-30,628,227 | + | C1H2g28936 | C2H2g28764 | LOC_Os02g54820 | - | - | Detail |
| CX2g022920 | 2:30,635,693-30,636,988 | - | C1H2g26730 | C2H2g18027 | LOC_Os02g54830 | Os02g0790600 | - | Detail |