| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g06755 | 9:9,337,649-9,338,483 | - | C1H9g27802 | CX9g057025 | LOC_Os09g17830 | Os09g0347700 | - | Detail |
| C2H9g21819 | 9:9,338,752-9,340,072 | - | C1H9g14906 | CX9g056471 | LOC_Os09g17870 | Os09g0347900 | - | Detail |
| C2H9g28813 | 9:9,347,060-9,358,828 | + | C1H9g17851 | CX9g055270 | LOC_Os09g17880 | Os09g0348400 | - | Detail |
| C2H9g04538 | 9:9,370,440-9,374,228 | + | C1H9g01869 | CX9g055010 | LOC_Os09g17910 | Os09g0348600 | - | Detail |
| C2H9g02814 | 9:9,374,722-9,377,673 | + | C1H9g20063 | CX9g055010 | LOC_Os09g17890 | Os09g0348600 | - | Detail |
| C2H9g23204 | 9:9,400,597-9,406,955 | + | C1H9g07181 | CX9g055660 | LOC_Os09g19380 | Os09g0358000 | - | Detail |
| C2H9g02888 | 9:9,410,880-9,411,698 | + | C1H9g20897 | CX9g057843 | LOC_Os09g18000 | Os09g0353200 | - | Detail |
| C2H9g22348 | 9:9,412,641-9,417,791 | + | C1H9g30901 | CX9g055803 | LOC_Os09g18010 | Os09g0349600 | - | Detail |
| C2H9g24613 | 9:9,420,242-9,422,694 | - | C1H9g13402 | CX9g058086 | LOC_Os09g18020 | Os09g0350900 | - | Detail |
| C2H9g16360 | 9:9,427,157-9,429,004 | - | C1H9g15429 | CX9g058086 | LOC_Os09g18020 | Os09g0349700 | - | Detail |
| C2H9g11607 | 9:9,441,521-9,441,886 | - | C1H9g17652 | CX9g055660 | LOC_Os09g17890 | Os09g0349800 | - | Detail |
| C2H9g25715 | 9:9,442,370-9,446,251 | - | C1H9g13402 | CX9g054841 | LOC_Os09g18020 | Os09g0351700 | - | Detail |
| C2H9g30424 | 9:9,446,327-9,449,475 | - | C1H9g30812 | CX9g054841 | LOC_Os09g18020 | Os09g0349700 | - | Detail |
| C2H9g22974 | 9:9,480,146-9,482,837 | - | C1H9g21112 | CX9g055660 | LOC_Os09g18159 | Os09g0350900 | - | Detail |
| C2H9g09080 | 9:9,483,313-9,486,949 | - | C1H9g05183 | CX9g055660 | LOC_Os09g18020 | Os09g0349700 | - | Detail |
| C2H9g07898 | 9:9,516,809-9,520,175 | - | C1H9g19942 | CX9g056907 | LOC_Os09g18159 | Os09g0350900 | - | Detail |
| C2H9g11163 | 9:9,524,732-9,531,707 | - | C1H9g05183 | CX9g056907 | LOC_Os09g18290 | Os09g0350900 | - | Detail |
| C2H9g14989 | 9:9,547,494-9,557,267 | - | C1H9g27029 | CX9g056592 | LOC_Os09g18230 | Os09g0351800 | - | Detail |
| C2H9g10780 | 9:9,580,968-9,584,040 | - | - | - | LOC_Os09g18250 | Os09g0351900 | - | Detail |
| C2H9g03446 | 9:9,588,667-9,594,125 | - | C1H9g30812 | CX9g055868 | LOC_Os09g18260 | Os09g0349700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g024148 | 2:29,448,682-29,451,518 | + | C1H2g09761 | C2H2g18956 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| CX2g023343 | 2:29,458,745-29,461,885 | + | C1H2g26295 | C2H2g02605 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| CX2g019855 | 2:29,465,113-29,467,702 | + | C1H2g14291 | C2H2g18172 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| CX2g022219 | 2:29,474,502-29,476,325 | - | C1H2g16728 | C2H2g26785 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| CX2g021656 | 2:29,478,527-29,479,126 | - | C1H2g27118 | C2H2g22917 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| CX2g021576 | 2:29,482,828-29,483,673 | + | - | C2H2g07248 | LOC_Os02g50805 | Os02g0231600 | - | Detail |
| CX2g018991 | 2:29,494,343-29,496,056 | + | C1H2g10581 | C2H2g26543 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| CX2g021489 | 2:29,498,406-29,500,000 | - | C1H2g08973 | C2H2g29404 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| CX2g019501 | 2:29,503,530-29,504,207 | - | C1H2g26635 | C2H2g24763 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| CX2g022397 | 2:29,506,919-29,510,750 | - | C1H2g13987 | C2H2g20003 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| CX2g019269 | 2:29,517,214-29,518,064 | + | C1H2g23770 | C2H2g16702 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| CX2g021391 | 2:29,520,552-29,524,796 | - | C1H2g16420 | C2H2g14916 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| CX2g023223 | 2:29,526,656-29,528,797 | - | C1H2g21062 | C2H2g08910 | LOC_Os02g52800 | Os02g0766900 | - | Detail |
| CX2g024302 | 2:29,532,779-29,537,569 | - | C1H2g20452 | C2H2g10227 | LOC_Os02g52810 | Os02g0767000 | - | Detail |
| CX2g022681 | 2:29,541,067-29,545,594 | + | C1H2g09699 | C2H2g03870 | LOC_Os02g52820 | Os02g0767100 | - | Detail |
| CX2g018835 | 2:29,546,445-29,549,701 | - | C1H2g10695 | C2H2g04249 | LOC_Os02g52830 | Os02g0767200 | - | Detail |
| CX2g023288 | 2:29,558,282-29,559,461 | - | C1H2g09946 | C2H2g14519 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| CX2g019076 | 2:29,560,504-29,562,111 | - | C1H2g24330 | C2H2g22142 | LOC_Os02g52850 | Os02g0767400 | SDRLK-59 | Detail |
| CX2g023311 | 2:29,567,003-29,570,479 | - | C1H2g03367 | C2H2g08643 | LOC_Os02g52860 | Os02g0767500 | - | Detail |
| CX2g020134 | 2:29,572,061-29,573,277 | + | C1H2g00086 | C2H2g01609 | LOC_Os02g52870 | Os02g0767600 | - | Detail |