| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g28785 | 4:1,024,388-1,024,848 | + | C2H4g09543 | CX4g034434 | - | - | - | Detail |
| C1H4g09357 | 4:1,058,261-1,058,806 | - | - | - | - | - | - | Detail |
| C1H4g10999 | 4:1,138,864-1,141,413 | + | C2H4g26759 | CX4g035743 | LOC_Os04g02850 | Os04g0118700 | - | Detail |
| C1H4g30040 | 4:1,143,816-1,146,739 | + | C2H4g08504 | CX4g032342 | LOC_Os04g02860 | Os04g0118800 | - | Detail |
| C1H4g10566 | 4:1,149,207-1,153,087 | - | C2H4g11798 | CX4g034307 | LOC_Os04g02870 | Os04g0118900 | OsRS29 | Detail |
| C1H4g07456 | 4:1,153,995-1,155,126 | - | - | - | - | - | - | Detail |
| C1H4g26984 | 4:1,157,802-1,158,199 | + | C2H4g23600 | CX4g036463 | LOC_Os04g02880 | Os04g0119000 | - | Detail |
| C1H4g01097 | 4:1,161,480-1,165,063 | + | C2H4g06483 | CX4g034760 | LOC_Os04g02900 | Os04g0119400 | FLO19 | Detail |
| C1H4g24475 | 4:1,168,495-1,171,971 | - | C2H4g08482 | CX4g032462 | LOC_Os04g02910 | Os04g0119500 | - | Detail |
| C1H4g07943 | 4:1,178,994-1,185,441 | + | C2H4g19285 | CX4g031645 | LOC_Os04g02920 | Os04g0119800 | - | Detail |
| C1H4g25987 | 4:1,190,081-1,201,805 | + | C2H4g21106 | CX4g031516 | LOC_Os04g02970 | Os04g0120100 | - | Detail |
| C1H4g01619 | 4:1,208,599-1,210,610 | + | C2H4g08717 | CX4g032545 | LOC_Os04g03050 | Os04g0121100 | - | Detail |
| C1H4g07856 | 4:1,213,250-1,217,224 | + | C2H4g29838 | CX4g032545 | LOC_Os04g02980 | Os04g0120300 | - | Detail |
| C1H4g16515 | 4:1,218,247-1,219,024 | + | C2H4g30144 | CX4g031516 | LOC_Os04g02980 | Os04g0120350 | - | Detail |
| C1H4g21533 | 4:1,238,633-1,249,050 | + | C2H4g04444 | CX4g034661 | LOC_Os04g03050 | Os04g0121100 | - | Detail |
| C1H4g12053 | 4:1,251,803-1,257,155 | + | C2H4g12397 | CX4g032499 | LOC_Os04g03100 | Os04g0121300 | - | Detail |
| C1H4g15960 | 4:1,264,365-1,264,682 | + | C2H4g01070 | CX4g036276 | - | - | - | Detail |
| C1H4g21418 | 4:1,280,194-1,280,681 | + | C2H4g10665 | CX4g033795 | LOC_Os04g03164 | Os04g0121800 | - | Detail |
| C1H4g29860 | 4:1,293,976-1,295,639 | - | C2H4g05913 | CX4g034990 | LOC_Os04g03180 | Os04g0122000 | - | Detail |
| C1H4g15787 | 4:1,297,256-1,299,687 | - | C2H4g12847 | CX4g033551 | LOC_Os04g03210 | Os04g0122200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g024148 | 2:29,448,682-29,451,518 | + | C1H2g09761 | C2H2g18956 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| CX2g023343 | 2:29,458,745-29,461,885 | + | C1H2g26295 | C2H2g02605 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| CX2g019855 | 2:29,465,113-29,467,702 | + | C1H2g14291 | C2H2g18172 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| CX2g022219 | 2:29,474,502-29,476,325 | - | C1H2g16728 | C2H2g26785 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| CX2g021656 | 2:29,478,527-29,479,126 | - | C1H2g27118 | C2H2g22917 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| CX2g021576 | 2:29,482,828-29,483,673 | + | - | C2H2g07248 | LOC_Os02g50805 | Os02g0231600 | - | Detail |
| CX2g018991 | 2:29,494,343-29,496,056 | + | C1H2g10581 | C2H2g26543 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| CX2g021489 | 2:29,498,406-29,500,000 | - | C1H2g08973 | C2H2g29404 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| CX2g019501 | 2:29,503,530-29,504,207 | - | C1H2g26635 | C2H2g24763 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| CX2g022397 | 2:29,506,919-29,510,750 | - | C1H2g13987 | C2H2g20003 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| CX2g019269 | 2:29,517,214-29,518,064 | + | C1H2g23770 | C2H2g16702 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| CX2g021391 | 2:29,520,552-29,524,796 | - | C1H2g16420 | C2H2g14916 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| CX2g023223 | 2:29,526,656-29,528,797 | - | C1H2g21062 | C2H2g08910 | LOC_Os02g52800 | Os02g0766900 | - | Detail |
| CX2g024302 | 2:29,532,779-29,537,569 | - | C1H2g20452 | C2H2g10227 | LOC_Os02g52810 | Os02g0767000 | - | Detail |
| CX2g022681 | 2:29,541,067-29,545,594 | + | C1H2g09699 | C2H2g03870 | LOC_Os02g52820 | Os02g0767100 | - | Detail |
| CX2g018835 | 2:29,546,445-29,549,701 | - | C1H2g10695 | C2H2g04249 | LOC_Os02g52830 | Os02g0767200 | - | Detail |
| CX2g023288 | 2:29,558,282-29,559,461 | - | C1H2g09946 | C2H2g14519 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| CX2g019076 | 2:29,560,504-29,562,111 | - | C1H2g24330 | C2H2g22142 | LOC_Os02g52850 | Os02g0767400 | SDRLK-59 | Detail |
| CX2g023311 | 2:29,567,003-29,570,479 | - | C1H2g03367 | C2H2g08643 | LOC_Os02g52860 | Os02g0767500 | - | Detail |
| CX2g020134 | 2:29,572,061-29,573,277 | + | C1H2g00086 | C2H2g01609 | LOC_Os02g52870 | Os02g0767600 | - | Detail |