| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02255 | 3:31,195,710-31,196,238 | + | C2H3g01155 | - | - | Os03g0800900 | - | Detail |
| C1H3g00648 | 3:31,196,402-31,198,824 | + | C2H3g25793 | CX3g026772 | LOC_Os03g58690 | Os03g0801500 | - | Detail |
| C1H3g06085 | 3:31,200,922-31,209,162 | + | C2H3g03346 | CX3g030423 | LOC_Os03g58700 | Os03g0801600 | - | Detail |
| C1H3g07389 | 3:31,209,469-31,212,779 | - | C2H3g21897 | CX3g026599 | LOC_Os03g58710 | Os03g0801700 | - | Detail |
| C1H3g31741 | 3:31,213,738-31,220,979 | + | C2H3g02470 | CX3g026853 | LOC_Os03g58720 | Os03g0801800 | - | Detail |
| C1H3g13444 | 3:31,223,466-31,224,907 | + | C2H3g24055 | CX3g028194 | LOC_Os03g58740 | Os03g0801900 | - | Detail |
| C1H3g10797 | 3:31,230,806-31,235,349 | - | - | - | - | - | - | Detail |
| C1H3g24645 | 3:31,241,816-31,242,136 | + | C2H3g06737 | CX3g027259 | LOC_Os03g58764 | - | - | Detail |
| C1H3g27952 | 3:31,243,853-31,249,285 | - | C2H3g22987 | CX3g026467 | LOC_Os03g58780 | Os03g0802300 | - | Detail |
| C1H3g06385 | 3:31,250,638-31,252,376 | - | - | CX3g027669 | - | Os02g0608200 | - | Detail |
| C1H3g23323 | 3:31,260,131-31,262,268 | + | C2H3g07093 | CX3g029310 | LOC_Os03g58800 | Os03g0802600 | - | Detail |
| C1H3g23165 | 3:31,262,030-31,265,989 | - | C2H3g04258 | CX3g031125 | LOC_Os03g58810 | Os03g0802700 | - | Detail |
| C1H3g24318 | 3:31,266,538-31,272,702 | - | C2H3g14685 | CX3g026858 | LOC_Os03g58820 | Os03g0802800 | - | Detail |
| C1H3g09968 | 3:31,273,573-31,277,304 | - | C2H3g03398 | CX3g029318 | LOC_Os03g58830 | Os03g0802900 | - | Detail |
| C1H3g24192 | 3:31,279,443-31,282,640 | + | C2H3g17483 | CX3g027749 | LOC_Os03g58840 | Os03g0803000 | - | Detail |
| C1H3g22193 | 3:31,287,014-31,287,505 | - | C2H3g08295 | CX3g026143 | LOC_Os03g58850 | Os03g0803100 | - | Detail |
| C1H3g05018 | 3:31,291,390-31,292,591 | - | C2H3g05041 | CX3g028924 | LOC_Os03g58870 | Os03g0803200 | - | Detail |
| C1H3g28908 | 3:31,294,026-31,295,522 | - | C2H3g16436 | CX3g027844 | LOC_Os03g58880 | Os03g0803500 | - | Detail |
| C1H3g17883 | 3:31,296,502-31,298,514 | - | C2H3g25525 | CX3g027844 | LOC_Os03g58890 | Os03g0803500 | - | Detail |
| C1H3g28909 | 3:31,299,876-31,303,002 | - | C2H3g12180 | CX3g027632 | LOC_Os03g58900 | Os03g0803600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g024148 | 2:29,448,682-29,451,518 | + | C1H2g09761 | C2H2g18956 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| CX2g023343 | 2:29,458,745-29,461,885 | + | C1H2g26295 | C2H2g02605 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| CX2g019855 | 2:29,465,113-29,467,702 | + | C1H2g14291 | C2H2g18172 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| CX2g022219 | 2:29,474,502-29,476,325 | - | C1H2g16728 | C2H2g26785 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| CX2g021656 | 2:29,478,527-29,479,126 | - | C1H2g27118 | C2H2g22917 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| CX2g021576 | 2:29,482,828-29,483,673 | + | - | C2H2g07248 | LOC_Os02g50805 | Os02g0231600 | - | Detail |
| CX2g018991 | 2:29,494,343-29,496,056 | + | C1H2g10581 | C2H2g26543 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| CX2g021489 | 2:29,498,406-29,500,000 | - | C1H2g08973 | C2H2g29404 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| CX2g019501 | 2:29,503,530-29,504,207 | - | C1H2g26635 | C2H2g24763 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| CX2g022397 | 2:29,506,919-29,510,750 | - | C1H2g13987 | C2H2g20003 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| CX2g019269 | 2:29,517,214-29,518,064 | + | C1H2g23770 | C2H2g16702 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| CX2g021391 | 2:29,520,552-29,524,796 | - | C1H2g16420 | C2H2g14916 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| CX2g023223 | 2:29,526,656-29,528,797 | - | C1H2g21062 | C2H2g08910 | LOC_Os02g52800 | Os02g0766900 | - | Detail |
| CX2g024302 | 2:29,532,779-29,537,569 | - | C1H2g20452 | C2H2g10227 | LOC_Os02g52810 | Os02g0767000 | - | Detail |
| CX2g022681 | 2:29,541,067-29,545,594 | + | C1H2g09699 | C2H2g03870 | LOC_Os02g52820 | Os02g0767100 | - | Detail |
| CX2g018835 | 2:29,546,445-29,549,701 | - | C1H2g10695 | C2H2g04249 | LOC_Os02g52830 | Os02g0767200 | - | Detail |
| CX2g023288 | 2:29,558,282-29,559,461 | - | C1H2g09946 | C2H2g14519 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| CX2g019076 | 2:29,560,504-29,562,111 | - | C1H2g24330 | C2H2g22142 | LOC_Os02g52850 | Os02g0767400 | SDRLK-59 | Detail |
| CX2g023311 | 2:29,567,003-29,570,479 | - | C1H2g03367 | C2H2g08643 | LOC_Os02g52860 | Os02g0767500 | - | Detail |
| CX2g020134 | 2:29,572,061-29,573,277 | + | C1H2g00086 | C2H2g01609 | LOC_Os02g52870 | Os02g0767600 | - | Detail |