| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g22275 | 9:6,438,106-6,439,258 | + | C2H9g07479 | CX9g057641 | - | Os09g0482840 | - | Detail |
| C1H9g04248 | 9:6,441,717-6,443,186 | + | C2H9g28255 | CX9g057610 | LOC_Os09g12530 | Os09g0296700 | - | Detail |
| C1H9g29624 | 9:6,441,963-6,442,966 | - | - | - | - | - | - | Detail |
| C1H9g21187 | 9:6,448,403-6,451,198 | + | C2H9g16228 | CX9g056490 | LOC_Os09g12540 | Os09g0296800 | OsLhcb7 | Detail |
| C1H9g06139 | 9:6,452,735-6,459,478 | + | C2H9g17110 | CX9g056084 | LOC_Os09g12550 | Os09g0296900 | HSLG2 | Detail |
| C1H9g10693 | 9:6,460,693-6,467,606 | + | C2H9g04106 | CX9g058097 | LOC_Os09g12560 | Os09g0297000 | FC1 | Detail |
| C1H9g27717 | 9:6,468,043-6,471,246 | - | C2H9g24691 | CX9g054933 | LOC_Os09g12570 | Os09g0297100 | - | Detail |
| C1H9g22827 | 9:6,479,465-6,482,765 | - | C2H9g07019 | CX9g058188 | LOC_Os09g12600 | Os09g0297400 | PPT1, OsPPT1 | Detail |
| C1H9g17081 | 9:6,485,287-6,485,873 | - | C2H9g10281 | CX9g054945 | LOC_Os09g12620 | Os09g0297800 | - | Detail |
| C1H9g28667 | 9:6,486,820-6,487,512 | - | C2H9g19494 | CX9g057472 | LOC_Os09g12630 | Os09g0297900 | - | Detail |
| C1H9g31684 | 9:6,490,842-6,495,431 | + | C2H9g30271 | CX9g056555 | LOC_Os09g12650 | Os09g0298100 | OsPFP1α4 | Detail |
| C1H9g00979 | 9:6,496,155-6,500,706 | - | C2H9g02028 | CX9g057527 | LOC_Os09g12660 | Os09g0298200 | - | Detail |
| C1H9g04278 | 9:6,506,799-6,511,865 | + | C2H9g04760 | CX9g056017 | LOC_Os09g12710 | Os09g0298400 | - | Detail |
| C1H9g29739 | 9:6,513,132-6,518,148 | - | C2H9g25888 | CX9g056522 | LOC_Os09g12720 | Os09g0298500 | - | Detail |
| C1H9g12166 | 9:6,528,716-6,535,957 | - | C2H9g07648 | CX9g057949 | LOC_Os09g12730 | Os09g0298700 | OsRRM | Detail |
| C1H9g29394 | 9:6,550,089-6,552,860 | + | C2H9g25106 | CX9g057083 | LOC_Os09g12750 | Os09g0299000 | OsPHL3 | Detail |
| C1H9g12987 | 9:6,559,922-6,561,970 | + | C2H9g10023 | CX9g057083 | LOC_Os09g12770 | Os09g0299200 | OsMYBc, MYBc | Detail |
| C1H9g12401 | 9:6,571,220-6,574,455 | + | C2H9g22093 | CX9g058183 | LOC_Os09g12780 | Os09g0299300 | - | Detail |
| C1H9g11121 | 9:6,575,537-6,579,655 | - | C2H9g17440 | CX9g056426 | LOC_Os09g12790 | Os09g0299400 | - | Detail |
| C1H9g03619 | 9:6,585,361-6,589,526 | - | C2H9g04412 | CX9g056639 | LOC_Os09g12800 | Os09g0299500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g024148 | 2:29,448,682-29,451,518 | + | C1H2g09761 | C2H2g18956 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| CX2g023343 | 2:29,458,745-29,461,885 | + | C1H2g26295 | C2H2g02605 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| CX2g019855 | 2:29,465,113-29,467,702 | + | C1H2g14291 | C2H2g18172 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| CX2g022219 | 2:29,474,502-29,476,325 | - | C1H2g16728 | C2H2g26785 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| CX2g021656 | 2:29,478,527-29,479,126 | - | C1H2g27118 | C2H2g22917 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| CX2g021576 | 2:29,482,828-29,483,673 | + | - | C2H2g07248 | LOC_Os02g50805 | Os02g0231600 | - | Detail |
| CX2g018991 | 2:29,494,343-29,496,056 | + | C1H2g10581 | C2H2g26543 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| CX2g021489 | 2:29,498,406-29,500,000 | - | C1H2g08973 | C2H2g29404 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| CX2g019501 | 2:29,503,530-29,504,207 | - | C1H2g26635 | C2H2g24763 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| CX2g022397 | 2:29,506,919-29,510,750 | - | C1H2g13987 | C2H2g20003 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| CX2g019269 | 2:29,517,214-29,518,064 | + | C1H2g23770 | C2H2g16702 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| CX2g021391 | 2:29,520,552-29,524,796 | - | C1H2g16420 | C2H2g14916 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| CX2g023223 | 2:29,526,656-29,528,797 | - | C1H2g21062 | C2H2g08910 | LOC_Os02g52800 | Os02g0766900 | - | Detail |
| CX2g024302 | 2:29,532,779-29,537,569 | - | C1H2g20452 | C2H2g10227 | LOC_Os02g52810 | Os02g0767000 | - | Detail |
| CX2g022681 | 2:29,541,067-29,545,594 | + | C1H2g09699 | C2H2g03870 | LOC_Os02g52820 | Os02g0767100 | - | Detail |
| CX2g018835 | 2:29,546,445-29,549,701 | - | C1H2g10695 | C2H2g04249 | LOC_Os02g52830 | Os02g0767200 | - | Detail |
| CX2g023288 | 2:29,558,282-29,559,461 | - | C1H2g09946 | C2H2g14519 | LOC_Os02g52840 | Os02g0767300 | OsFLS | Detail |
| CX2g019076 | 2:29,560,504-29,562,111 | - | C1H2g24330 | C2H2g22142 | LOC_Os02g52850 | Os02g0767400 | SDRLK-59 | Detail |
| CX2g023311 | 2:29,567,003-29,570,479 | - | C1H2g03367 | C2H2g08643 | LOC_Os02g52860 | Os02g0767500 | - | Detail |
| CX2g020134 | 2:29,572,061-29,573,277 | + | C1H2g00086 | C2H2g01609 | LOC_Os02g52870 | Os02g0767600 | - | Detail |