| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11455 | 3:5,667,589-5,676,280 | - | C2H3g25606 | CX3g031100 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| C1H3g05328 | 3:5,679,033-5,682,233 | - | C2H3g28200 | CX3g028642 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| C1H3g22084 | 3:5,683,225-5,684,571 | - | - | CX1g001382 | - | - | - | Detail |
| C1H3g10920 | 3:5,689,450-5,690,709 | + | C2H3g21744 | CX3g029448 | LOC_Os03g12210 | Os03g0222500 | - | Detail |
| C1H3g07232 | 3:5,698,966-5,701,249 | + | C2H3g09344 | CX3g031317 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| C1H3g04972 | 3:5,702,621-5,707,780 | + | C2H3g04698 | CX3g028958 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| C1H3g26972 | 3:5,709,181-5,711,242 | + | C2H3g19892 | CX3g027447 | LOC_Os03g12238 | - | - | Detail |
| C1H3g14957 | 3:5,715,416-5,719,293 | + | C2H3g10667 | CX3g031278 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| C1H3g14297 | 3:5,724,282-5,725,868 | - | C2H3g29015 | CX3g030840 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| C1H3g13087 | 3:5,730,852-5,733,610 | + | C2H3g13113 | CX3g029663 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| C1H3g19225 | 3:5,739,506-5,740,695 | - | C2H3g16993 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g05930 | 3:5,741,048-5,743,366 | - | C2H3g28472 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g02751 | 3:5,747,807-5,755,905 | - | C2H3g01042 | CX3g025777 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| C1H3g05662 | 3:5,768,070-5,772,723 | + | C2H3g20060 | CX3g029397 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| C1H3g16565 | 3:5,781,460-5,786,781 | + | C2H3g29213 | CX3g029992 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| C1H3g12418 | 3:5,787,327-5,791,771 | - | C2H3g11335 | CX3g029383 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| C1H3g18389 | 3:5,803,605-5,807,389 | + | C2H3g05885 | CX3g025920 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| C1H3g09012 | 3:5,811,317-5,812,336 | - | C2H3g25300 | CX3g025136 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C1H3g14793 | 3:5,818,975-5,823,594 | - | C2H3g05543 | CX3g027495 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| C1H3g12506 | 3:5,824,997-5,826,409 | - | C2H3g22350 | CX3g027176 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020141 | 2:29,088,856-29,096,353 | + | C1H2g12325 | C2H2g03959 | LOC_Os02g51810 | Os02g0754500 | OM64 | Detail |
| CX2g020843 | 2:29,096,933-29,098,322 | + | C1H2g07702 | C2H2g24256 | LOC_Os02g51820 | Os02g0754600 | - | Detail |
| CX2g020955 | 2:29,098,793-29,103,598 | - | C1H2g01909 | C2H2g22795 | LOC_Os02g51830 | Os02g0754700 | - | Detail |
| CX2g019973 | 2:29,105,153-29,107,430 | + | C1H2g27515 | C2H2g17343 | LOC_Os02g51840 | Os02g0754800 | - | Detail |
| CX2g022594 | 2:29,108,706-29,110,777 | - | C1H2g28331 | C2H2g07883 | LOC_Os02g51850 | Os02g0754900 | - | Detail |
| CX2g020526 | 2:29,112,264-29,112,461 | - | - | - | - | - | - | Detail |
| CX2g023066 | 2:29,114,488-29,115,227 | - | - | - | LOC_Os02g46710 | - | - | Detail |
| CX2g018861 | 2:29,117,290-29,119,666 | - | C1H2g20999 | C2H2g17447 | LOC_Os02g50820 | Os02g0741800 | - | Detail |
| CX2g022833 | 2:29,121,738-29,126,230 | - | C1H2g15196 | C2H2g23797 | LOC_Os02g51860 | Os02g0755000 | OsTSD2 | Detail |
| CX2g019292 | 2:29,131,763-29,134,240 | - | - | C2H2g29751 | LOC_Os02g51880 | Os02g0755200 | - | Detail |
| CX2g023524 | 2:29,139,839-29,142,342 | + | C1H2g30118 | C2H2g13588 | LOC_Os02g51890 | Os02g0755400 | - | Detail |
| CX2g020690 | 2:29,145,926-29,147,473 | - | C1H2g05375 | C2H2g18444 | LOC_Os02g51900 | Os02g0755500 | UGT85E1 | Detail |
| CX2g019012 | 2:29,149,025-29,150,668 | - | C1H2g13173 | C2H2g25167 | LOC_Os02g51910 | Os02g0755600 | - | Detail |
| CX2g024626 | 2:29,152,134-29,152,361 | + | - | - | LOC_Os02g55450 | - | - | Detail |
| CX2g020923 | 2:29,158,957-29,160,580 | + | C1H2g00252 | C2H2g08519 | LOC_Os02g51930 | Os02g0755900 | UGT3, OsUGT3 | Detail |
| CX2g022296 | 2:29,169,147-29,170,073 | - | - | C2H2g05080 | LOC_Os02g51970 | Os02g0756200 | - | Detail |
| CX2g020271 | 2:29,174,434-29,175,375 | - | - | C2H2g26812 | LOC_Os02g52000 | Os02g0756600 | - | Detail |
| CX2g023021 | 2:29,178,680-29,179,666 | - | - | C2H2g05361 | LOC_Os02g52010 | Os02g0756800 | - | Detail |
| CX2g023173 | 2:29,187,321-29,187,806 | + | C1H2g18356 | C2H2g04860 | LOC_Os02g52120 | - | - | Detail |
| CX2g020517 | 2:29,197,677-29,199,487 | + | C1H2g11994 | C2H2g26225 | LOC_Os02g52130 | Os02g0757700 | - | Detail |