| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17381 | 3:91,885-92,302 | - | C2H3g00405 | CX3g025489 | LOC_Os03g01140 | Os03g0101000 | - | Detail |
| C1H3g21267 | 3:93,891-97,768 | + | C2H3g18212 | CX3g029599 | LOC_Os03g01150 | Os03g0101100 | - | Detail |
| C1H3g29573 | 3:97,673-101,671 | - | C2H3g24205 | CX3g030198 | LOC_Os03g01160 | Os03g0101200 | - | Detail |
| C1H3g22019 | 3:105,501-108,460 | - | C2H3g02388 | CX3g030753 | LOC_Os03g01170 | Os03g0101300 | - | Detail |
| C1H3g22515 | 3:110,566-112,211 | - | C2H3g13566 | CX3g030969 | LOC_Os03g01180 | Os03g0101500 | - | Detail |
| C1H3g10161 | 3:112,505-122,141 | - | C2H3g27968 | CX3g028165 | LOC_Os03g01190 | Os03g0101600 | - | Detail |
| C1H3g10633 | 3:127,172-129,107 | + | C2H3g26911 | CX3g025690 | LOC_Os03g01210 | Os03g0101800 | - | Detail |
| C1H3g06917 | 3:131,198-135,101 | + | C2H3g12060 | CX3g029047 | LOC_Os03g01216 | Os03g0101900 | - | Detail |
| C1H3g00218 | 3:136,057-139,222 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01222 | Os03g0102100 | - | Detail |
| C1H3g25020 | 3:139,497-139,992 | + | C2H3g00981 | CX3g027602 | LOC_Os03g01230 | Os03g0102200 | - | Detail |
| C1H3g05989 | 3:144,120-145,453 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102300 | - | Detail |
| C1H3g16074 | 3:152,867-154,906 | + | C2H3g16038 | CX3g029938 | LOC_Os03g01240 | Os03g0102333 | - | Detail |
| C1H3g05608 | 3:156,546-160,521 | + | C2H3g07325 | CX3g029938 | LOC_Os03g01240 | Os03g0102366 | - | Detail |
| C1H3g25301 | 3:160,940-166,247 | - | C2H3g23495 | CX3g027923 | LOC_Os03g01250 | Os03g0102400 | - | Detail |
| C1H3g20737 | 3:169,996-170,856 | - | C2H3g09146 | CX3g028399 | LOC_Os03g01260 | Os03g0102500 | - | Detail |
| C1H3g18000 | 3:175,530-177,277 | + | C2H3g19463 | CX3g030913 | LOC_Os03g01270 | Os03g0102700 | OsEXPB7 | Detail |
| C1H3g03491 | 3:185,959-187,024 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g16425 | 3:188,066-189,290 | + | C2H3g08091 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C1H3g01568 | 3:193,134-193,559 | + | C2H3g24645 | CX3g025864 | LOC_Os03g01300 | Os03g0103100 | - | Detail |
| C1H3g18184 | 3:206,204-206,818 | + | C2H3g27129 | CX3g025864 | LOC_Os03g01320 | Os03g0103300 | qLTG-3-1(t), qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020141 | 2:29,088,856-29,096,353 | + | C1H2g12325 | C2H2g03959 | LOC_Os02g51810 | Os02g0754500 | OM64 | Detail |
| CX2g020843 | 2:29,096,933-29,098,322 | + | C1H2g07702 | C2H2g24256 | LOC_Os02g51820 | Os02g0754600 | - | Detail |
| CX2g020955 | 2:29,098,793-29,103,598 | - | C1H2g01909 | C2H2g22795 | LOC_Os02g51830 | Os02g0754700 | - | Detail |
| CX2g019973 | 2:29,105,153-29,107,430 | + | C1H2g27515 | C2H2g17343 | LOC_Os02g51840 | Os02g0754800 | - | Detail |
| CX2g022594 | 2:29,108,706-29,110,777 | - | C1H2g28331 | C2H2g07883 | LOC_Os02g51850 | Os02g0754900 | - | Detail |
| CX2g020526 | 2:29,112,264-29,112,461 | - | - | - | - | - | - | Detail |
| CX2g023066 | 2:29,114,488-29,115,227 | - | - | - | LOC_Os02g46710 | - | - | Detail |
| CX2g018861 | 2:29,117,290-29,119,666 | - | C1H2g20999 | C2H2g17447 | LOC_Os02g50820 | Os02g0741800 | - | Detail |
| CX2g022833 | 2:29,121,738-29,126,230 | - | C1H2g15196 | C2H2g23797 | LOC_Os02g51860 | Os02g0755000 | OsTSD2 | Detail |
| CX2g019292 | 2:29,131,763-29,134,240 | - | - | C2H2g29751 | LOC_Os02g51880 | Os02g0755200 | - | Detail |
| CX2g023524 | 2:29,139,839-29,142,342 | + | C1H2g30118 | C2H2g13588 | LOC_Os02g51890 | Os02g0755400 | - | Detail |
| CX2g020690 | 2:29,145,926-29,147,473 | - | C1H2g05375 | C2H2g18444 | LOC_Os02g51900 | Os02g0755500 | UGT85E1 | Detail |
| CX2g019012 | 2:29,149,025-29,150,668 | - | C1H2g13173 | C2H2g25167 | LOC_Os02g51910 | Os02g0755600 | - | Detail |
| CX2g024626 | 2:29,152,134-29,152,361 | + | - | - | LOC_Os02g55450 | - | - | Detail |
| CX2g020923 | 2:29,158,957-29,160,580 | + | C1H2g00252 | C2H2g08519 | LOC_Os02g51930 | Os02g0755900 | UGT3, OsUGT3 | Detail |
| CX2g022296 | 2:29,169,147-29,170,073 | - | - | C2H2g05080 | LOC_Os02g51970 | Os02g0756200 | - | Detail |
| CX2g020271 | 2:29,174,434-29,175,375 | - | - | C2H2g26812 | LOC_Os02g52000 | Os02g0756600 | - | Detail |
| CX2g023021 | 2:29,178,680-29,179,666 | - | - | C2H2g05361 | LOC_Os02g52010 | Os02g0756800 | - | Detail |
| CX2g023173 | 2:29,187,321-29,187,806 | + | C1H2g18356 | C2H2g04860 | LOC_Os02g52120 | - | - | Detail |
| CX2g020517 | 2:29,197,677-29,199,487 | + | C1H2g11994 | C2H2g26225 | LOC_Os02g52130 | Os02g0757700 | - | Detail |