| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01633 | 1:13,985,566-13,987,145 | + | C2H1g16372 | CX1g000761 | LOC_Os01g27380 | Os01g0371400 | - | Detail |
| C1H1g01995 | 1:13,987,557-13,990,326 | + | C2H1g14709 | CX1g000761 | LOC_Os01g27390 | Os01g0371500 | - | Detail |
| C1H1g01504 | 1:13,998,693-13,999,781 | + | C2H1g17472 | CX1g005217 | LOC_Os01g27470 | Os01g0918300 | - | Detail |
| C1H1g17266 | 1:14,001,289-14,001,888 | + | - | - | - | - | - | Detail |
| C1H1g12705 | 1:14,004,630-14,005,499 | + | C2H1g29817 | CX1g000438 | LOC_Os01g27480 | Os01g0372400 | - | Detail |
| C1H1g03999 | 1:14,014,209-14,018,105 | - | C2H1g22981 | CX1g002992 | LOC_Os01g27520 | Os01g0372700 | - | Detail |
| C1H1g23536 | 1:14,024,746-14,026,920 | - | C2H1g25759 | - | LOC_Os01g27570 | Os01g0373200 | - | Detail |
| C1H1g26843 | 1:14,052,677-14,053,791 | + | C2H1g20925 | CX1g000761 | LOC_Os01g27630 | Os01g0374000 | - | Detail |
| C1H1g29878 | 1:14,074,603-14,075,089 | - | - | CX1g006362 | - | - | - | Detail |
| C1H1g28149 | 1:14,095,777-14,101,195 | + | C2H1g20909 | CX1g004412 | LOC_Os01g27700 | Os01g0374600 | - | Detail |
| C1H1g20959 | 1:14,114,711-14,118,317 | + | C2H1g09188 | CX1g004732 | LOC_Os01g27720 | Os01g0374900 | - | Detail |
| C1H1g00644 | 1:14,125,958-14,129,334 | - | C2H1g06879 | CX1g001904 | LOC_Os01g27730 | Os01g0375000 | - | Detail |
| C1H1g07698 | 1:14,135,205-14,139,334 | - | - | - | - | - | - | Detail |
| C1H1g01071 | 1:14,140,780-14,153,926 | + | C2H1g10267 | CX1g003513 | LOC_Os01g27750 | Os01g0375200 | - | Detail |
| C1H1g18637 | 1:14,162,937-14,172,346 | + | C2H1g13628 | CX1g003513 | LOC_Os01g27750 | Os01g0375500 | - | Detail |
| C1H1g22380 | 1:14,195,576-14,195,833 | + | - | - | - | - | - | Detail |
| C1H1g01263 | 1:14,225,763-14,230,411 | - | C2H1g12554 | CX1g004909 | LOC_Os01g27880 | Os01g0376700 | - | Detail |
| C1H1g16294 | 1:14,233,831-14,235,701 | - | C2H1g07279 | CX1g001309 | LOC_Os01g27890 | Os01g0377000 | - | Detail |
| C1H1g11469 | 1:14,242,780-14,248,505 | - | C2H1g24403 | CX1g006147 | LOC_Os01g27940 | Os01g0377500 | - | Detail |
| C1H1g30770 | 1:14,260,828-14,265,036 | + | C2H1g07748 | CX1g002553 | LOC_Os01g27990 | Os01g0377700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023479 | 2:28,219,591-28,225,810 | + | C1H2g10005 | C2H2g04852 | LOC_Os02g50370 | Os02g0736600 | - | Detail |
| CX2g023200 | 2:28,226,208-28,226,465 | - | C1H2g07594 | C2H2g22765 | - | Os02g0736700 | - | Detail |
| CX2g022254 | 2:28,229,632-28,229,994 | - | - | C2H2g11611 | - | Os02g0736900 | - | Detail |
| CX2g022563 | 2:28,250,914-28,251,108 | + | C1H2g31655 | C2H2g19151 | LOC_Os02g51930 | Os02g0755900 | UGT3, OsUGT3 | Detail |
| CX2g023707 | 2:28,254,575-28,255,939 | - | C1H2g22578 | C2H2g10969 | LOC_Os02g50460 | Os02g0738200 | - | Detail |
| CX2g024898 | 2:28,261,179-28,261,361 | - | - | - | - | - | - | Detail |
| CX2g021204 | 2:28,273,265-28,278,778 | + | C1H2g00500 | C2H2g16308 | LOC_Os02g50480 | Os02g0738400 | OHK5, OHK5, Ohk5, OsHK1, OsHK6, HK, Crl1a | Detail |
| CX2g020936 | 2:28,287,936-28,291,324 | + | C1H2g09387 | C2H2g12754 | LOC_Os02g50490 | Os02g0738600 | - | Detail |
| CX2g019732 | 2:28,297,630-28,298,362 | + | - | - | LOC_Os02g50670 | Os07g0631500 | - | Detail |
| CX2g022539 | 2:28,300,105-28,309,550 | - | C1H2g28406 | C2H2g25440 | LOC_Os02g50550 | Os02g0738900 | BC3, bc3, bc-3, OsDRP2B, DRP2B | Detail |
| CX2g024755 | 2:28,311,017-28,320,130 | + | C1H2g06055 | C2H2g10338 | LOC_Os02g50560 | Os02g0739000 | - | Detail |
| CX2g024527 | 2:28,320,421-28,324,471 | - | C1H2g22155 | C2H2g19070 | LOC_Os02g50570 | Os02g0739100 | - | Detail |
| CX2g023617 | 2:28,333,938-28,335,023 | - | C1H2g26267 | C2H2g12798 | LOC_Os02g50600 | Os02g0739400 | - | Detail |
| CX2g023255 | 2:28,344,985-28,348,399 | - | C1H2g19740 | C2H2g13279 | LOC_Os02g50620 | Os02g0739600 | - | Detail |
| CX2g021394 | 2:28,350,204-28,353,033 | - | C1H2g02446 | C2H2g20599 | LOC_Os02g50630 | Os02g0739700 | OsE2Fe-1 | Detail |
| CX2g023514 | 2:28,356,867-28,359,897 | - | C1H2g01602 | C2H2g22496 | LOC_Os02g50640 | Os02g0739900 | - | Detail |
| CX2g021304 | 2:28,375,134-28,381,229 | - | C1H2g14498 | C2H2g07910 | LOC_Os02g50680 | Os02g0740300 | - | Detail |
| CX2g024066 | 2:28,382,004-28,383,439 | - | C1H2g26149 | C2H2g25866 | LOC_Os02g50690 | Os02g0740400 | - | Detail |
| CX2g023069 | 2:28,387,811-28,388,574 | + | C1H2g27425 | C2H2g26692 | LOC_Os02g50700 | Os02g0740500 | - | Detail |
| CX2g024544 | 2:28,394,651-28,397,408 | - | C1H2g04140 | C2H2g23006 | LOC_Os02g50710 | Os02g0740600 | - | Detail |