| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g24976 | 3:1,372,275-1,376,010 | - | C1H3g25549 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C2H3g12077 | 3:1,387,255-1,391,634 | + | C1H3g29800 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C2H3g19950 | 3:1,392,232-1,393,624 | - | C1H3g05509 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| C2H3g30344 | 3:1,394,053-1,399,749 | + | C1H3g30034 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C2H3g21860 | 3:1,404,013-1,406,291 | + | C1H3g26756 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C2H3g23213 | 3:1,406,683-1,410,322 | - | C1H3g08238 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C2H3g26117 | 3:1,414,790-1,423,165 | - | C1H3g14096 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C2H3g26797 | 3:1,423,761-1,427,115 | + | C1H3g27982 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C2H3g27426 | 3:1,428,759-1,429,260 | + | C1H3g08454 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C2H3g07876 | 3:1,429,591-1,432,220 | - | C1H3g20373 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C2H3g29721 | 3:1,433,820-1,434,149 | - | C1H3g01611 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C2H3g13057 | 3:1,434,301-1,438,600 | - | C1H3g14716 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C2H3g09690 | 3:1,449,674-1,450,205 | - | - | - | - | - | - | Detail |
| C2H3g05832 | 3:1,450,869-1,451,201 | - | C1H3g30382 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C2H3g07821 | 3:1,470,488-1,472,663 | + | C1H3g27546 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C2H3g09589 | 3:1,475,498-1,476,222 | + | C1H3g09567 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C2H3g10593 | 3:1,478,539-1,478,893 | + | C1H3g01006 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C2H3g18638 | 3:1,480,046-1,483,365 | + | C1H3g27010 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C2H3g06449 | 3:1,483,681-1,491,487 | - | C1H3g11205 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C2H3g20859 | 3:1,495,493-1,500,360 | - | C1H3g17616 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022148 | 2:27,944,814-27,951,130 | + | C1H2g08098 | C2H2g21462 | LOC_Os02g49840 | Os02g0731200 | OsMADS57 | Detail |
| CX2g020726 | 2:27,960,243-27,960,761 | + | C1H2g22689 | C2H2g03897 | LOC_Os02g49850 | Os02g0731400 | - | Detail |
| CX2g021129 | 2:27,961,424-27,962,355 | - | C1H2g07036 | C2H2g25341 | LOC_Os02g49860 | Os02g0731500 | - | Detail |
| CX2g023460 | 2:27,964,381-27,965,413 | + | C1H2g04869 | C2H2g19830 | LOC_Os02g49870 | Os02g0731600 | - | Detail |
| CX2g020051 | 2:27,966,395-27,967,848 | - | C1H2g00972 | C2H2g14461 | LOC_Os02g49880 | Os02g0731700 | OsK, Ghd2 | Detail |
| CX2g020810 | 2:27,976,415-27,976,576 | + | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX2g024323 | 2:27,982,555-27,982,704 | + | - | - | LOC_Os11g12240 | Os11g0476333 | - | Detail |
| CX2g019425 | 2:27,988,321-27,990,039 | - | - | - | - | - | - | Detail |
| CX2g022879 | 2:27,996,999-28,000,937 | + | C1H2g22578 | C2H2g12585 | LOC_Os02g49950 | Os02g0732200 | - | Detail |
| CX2g019944 | 2:28,003,145-28,004,020 | - | - | - | - | Os02g0732350 | - | Detail |
| CX2g019464 | 2:28,007,396-28,008,513 | + | C1H2g28110 | C2H2g20922 | LOC_Os02g49970 | Os02g0732400 | - | Detail |
| CX2g023132 | 2:28,011,996-28,013,423 | - | C1H2g10850 | C2H2g17194 | LOC_Os02g49980 | Os02g0732500 | - | Detail |
| CX2g021353 | 2:28,018,102-28,019,116 | - | C1H2g05502 | C2H2g26612 | LOC_Os02g49986 | Os02g0732600 | Os2R_MYB30 | Detail |
| CX2g020946 | 2:28,020,705-28,031,879 | - | C1H2g24742 | C2H2g25135 | LOC_Os02g49992 | Os02g0732700 | - | Detail |
| CX2g023389 | 2:28,032,753-28,034,348 | - | C1H2g27424 | C2H2g26888 | LOC_Os02g50000 | Os02g0732800 | - | Detail |
| CX2g020808 | 2:28,035,763-28,038,715 | + | C1H2g26386 | C2H2g07391 | LOC_Os02g50010 | Os02g0732900 | - | Detail |
| CX2g019891 | 2:28,039,260-28,041,414 | - | C1H2g27002 | C2H2g23355 | LOC_Os02g50020 | Os02g0733001 | - | Detail |
| CX2g018981 | 2:28,045,783-28,046,058 | - | - | - | LOC_Os02g55450 | - | - | Detail |
| CX2g019255 | 2:28,048,768-28,051,512 | + | C1H2g31248 | C2H2g17859 | LOC_Os02g50040 | Os02g0733300 | OsGH9B1 | Detail |
| CX2g024096 | 2:28,052,222-28,052,873 | - | C1H2g05277 | C2H2g23239 | LOC_Os02g50050 | Os02g0733400 | - | Detail |