| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g25606 | 3:5,617,924-5,626,626 | - | C1H3g11455 | CX3g031100 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| C2H3g28200 | 3:5,629,758-5,631,757 | - | C1H3g05328 | CX3g028642 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| C2H3g21744 | 3:5,655,861-5,657,114 | + | C1H3g10920 | - | LOC_Os03g12210 | Os03g0222500 | - | Detail |
| C2H3g09344 | 3:5,664,107-5,666,372 | + | C1H3g07232 | CX3g031317 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| C2H3g04698 | 3:5,668,849-5,673,629 | + | C1H3g04972 | CX3g028958 | LOC_Os03g12236 | Os03g0222700 | - | Detail |
| C2H3g19892 | 3:5,674,920-5,676,941 | + | C1H3g26972 | CX3g027447 | LOC_Os03g12238 | - | - | Detail |
| C2H3g10667 | 3:5,679,824-5,684,019 | + | C1H3g14957 | CX3g031278 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| C2H3g29015 | 3:5,690,854-5,692,440 | - | C1H3g14297 | CX3g030840 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| C2H3g13113 | 3:5,697,671-5,700,203 | + | C1H3g13087 | CX3g029663 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| C2H3g16993 | 3:5,702,030-5,703,478 | - | C1H3g19225 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C2H3g28472 | 3:5,703,831-5,706,150 | - | C1H3g05930 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C2H3g01042 | 3:5,710,893-5,718,986 | - | C1H3g02751 | CX3g025777 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| C2H3g20060 | 3:5,730,175-5,734,820 | + | C1H3g05662 | CX3g029397 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| C2H3g29213 | 3:5,743,380-5,748,702 | + | C1H3g16565 | CX3g029992 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| C2H3g11335 | 3:5,749,246-5,753,687 | - | C1H3g12418 | CX3g029383 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| C2H3g05885 | 3:5,765,625-5,769,411 | + | C1H3g18389 | CX3g025920 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| C2H3g25300 | 3:5,773,342-5,774,361 | - | C1H3g09012 | CX3g025136 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C2H3g05543 | 3:5,781,025-5,785,623 | - | C1H3g14793 | CX3g027495 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| C2H3g22350 | 3:5,787,025-5,788,437 | - | C1H3g12506 | CX3g027176 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| C2H3g21341 | 3:5,789,758-5,791,688 | + | C1H3g26939 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023711 | 2:26,386,162-26,386,410 | + | C1H2g28254 | C2H2g15500 | LOC_Os02g46839 | Os02g0695700 | - | Detail |
| CX2g022785 | 2:26,386,892-26,392,664 | - | C1H2g02703 | C2H2g15458 | LOC_Os02g46850 | Os02g0695800 | - | Detail |
| CX2g023312 | 2:26,393,204-26,393,356 | + | - | - | - | Os02g0630650 | - | Detail |
| CX2g022117 | 2:26,403,099-26,404,995 | + | C1H2g13360 | C2H2g12937 | LOC_Os02g46910 | Os02g0696500 | - | Detail |
| CX2g024061 | 2:26,405,485-26,405,658 | - | - | - | - | - | - | Detail |
| CX2g020990 | 2:26,414,822-26,420,313 | + | C1H2g30720 | C2H2g26485 | LOC_Os02g46930 | Os02g0696700 | JMJ707 | Detail |
| CX2g022564 | 2:26,427,761-26,432,547 | + | C1H2g01605 | C2H2g08332 | LOC_Os02g46940 | Os02g0696900 | - | Detail |
| CX2g024745 | 2:26,442,339-26,445,262 | + | C1H2g00090 | C2H2g01904 | LOC_Os02g46956 | Os02g0697200 | - | Detail |
| CX2g022468 | 2:26,446,611-26,450,139 | + | C1H2g12534 | C2H2g16657 | LOC_Os02g46962 | Os02g0697300 | - | Detail |
| CX2g023465 | 2:26,451,079-26,454,892 | - | C1H2g06035 | C2H2g27000 | LOC_Os02g46970 | Os02g0697400 | 4CL2, Os4CL2 | Detail |
| CX2g020256 | 2:26,456,813-26,458,755 | - | C1H2g11528 | C2H2g05522 | LOC_Os02g46980 | Os02g0697500 | - | Detail |
| CX2g021170 | 2:26,462,050-26,466,271 | + | C1H2g31638 | C2H2g00397 | LOC_Os02g46990 | Os02g0697600 | - | Detail |
| CX2g022742 | 2:26,467,427-26,468,800 | - | C1H2g04653 | C2H2g14923 | LOC_Os02g47000 | Os02g0697700 | - | Detail |
| CX2g021805 | 2:26,469,293-26,472,360 | + | C1H2g09723 | C2H2g29054 | LOC_Os02g47010 | Os02g0697800 | - | Detail |
| CX2g024307 | 2:26,474,231-26,476,218 | + | C1H2g14448 | C2H2g27677 | LOC_Os02g47020 | Os02g0698000 | - | Detail |
| CX2g021243 | 2:26,477,267-26,478,415 | - | C1H2g18534 | C2H2g18315 | LOC_Os02g47030 | Os02g0698100 | - | Detail |
| CX2g024217 | 2:26,493,514-26,497,600 | + | C1H2g02655 | C2H2g18843 | LOC_Os02g47060 | Os02g0698800 | - | Detail |
| CX2g023002 | 2:26,517,915-26,520,524 | + | C1H2g03123 | C2H2g14858 | LOC_Os02g47090 | Os02g0699000 | OsNPF7.2 | Detail |
| CX2g021504 | 2:26,525,161-26,527,942 | + | C1H2g20162 | C2H2g19221 | LOC_Os02g47110 | Os02g0699300 | - | Detail |
| CX2g024335 | 2:26,529,714-26,536,406 | + | C1H2g00453 | C2H2g09814 | LOC_Os02g47120 | Os02g0699400 | RSH3c | Detail |