| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08260 | 3:2,259,582-2,262,525 | + | C2H3g06828 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C1H3g20268 | 3:2,263,976-2,264,901 | - | C2H3g21623 | CX3g028017 | - | - | - | Detail |
| C1H3g29909 | 3:2,265,126-2,270,153 | + | C2H3g05886 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C1H3g25012 | 3:2,274,096-2,275,920 | - | C2H3g28085 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C1H3g19868 | 3:2,280,784-2,281,256 | + | C2H3g09242 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C1H3g27335 | 3:2,285,142-2,289,430 | + | C2H3g13895 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C1H3g02545 | 3:2,292,095-2,292,415 | + | C2H3g14044 | CX3g026084 | - | - | - | Detail |
| C1H3g29062 | 3:2,292,424-2,294,517 | + | C2H3g11885 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C1H3g17015 | 3:2,295,444-2,316,133 | + | C2H3g15286 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C1H3g05189 | 3:2,330,831-2,331,278 | - | - | - | - | - | - | Detail |
| C1H3g30836 | 3:2,336,655-2,347,097 | - | C2H3g18202 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C1H3g06760 | 3:2,356,866-2,361,842 | - | C2H3g23117 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C1H3g11420 | 3:2,362,605-2,364,829 | + | C2H3g11846 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C1H3g01679 | 3:2,365,435-2,366,677 | - | C2H3g18230 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C1H3g05732 | 3:2,375,010-2,376,066 | - | C2H3g10578 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C1H3g20087 | 3:2,378,263-2,379,597 | - | C2H3g08315 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C1H3g24625 | 3:2,386,225-2,389,760 | + | C2H3g07329 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C1H3g03956 | 3:2,393,000-2,395,698 | - | C2H3g09418 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C1H3g20130 | 3:2,402,864-2,403,494 | + | C2H3g30161 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C1H3g20743 | 3:2,406,487-2,407,344 | - | C2H3g15126 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003720 | 1:11,407,280-11,409,590 | - | C1H1g04116 | - | - | - | - | Detail |
| CX1g004853 | 1:11,409,838-11,415,327 | + | C1H1g24526 | C2H1g14248 | LOC_Os01g23530 | Os01g0337100 | OsTPS1 | Detail |
| CX1g006068 | 1:11,421,598-11,427,781 | + | C1H1g15203 | C2H1g23715 | LOC_Os01g23580 | Os01g0337500 | - | Detail |
| CX1g006612 | 1:11,428,931-11,443,473 | - | C1H1g02550 | C2H1g14719 | LOC_Os01g23590 | Os01g0337600 | - | Detail |
| CX1g005196 | 1:11,446,556-11,454,430 | + | C1H1g31824 | C2H1g25789 | LOC_Os01g23610 | Os01g0337900 | OsLPD2 | Detail |
| CX1g003937 | 1:11,460,505-11,462,185 | + | C1H1g07766 | C2H1g07427 | LOC_Os01g23620 | Os01g0338000 | - | Detail |
| CX1g003576 | 1:11,465,386-11,468,193 | + | C1H1g18847 | C2H1g12886 | LOC_Os01g23630 | Os01g0338100 | - | Detail |
| CX1g002951 | 1:11,470,591-11,479,244 | + | C1H1g20446 | C2H1g27271 | LOC_Os01g23640 | Os01g0338200 | - | Detail |
| CX1g002645 | 1:11,488,711-11,492,685 | - | C1H1g02265 | C2H1g02413 | LOC_Os01g23680 | Os01g0338600 | - | Detail |
| CX1g006775 | 1:11,510,859-11,511,209 | + | - | - | LOC_Os01g23705 | Os01g0339400 | - | Detail |
| CX1g005605 | 1:11,511,782-11,514,032 | - | C1H1g28850 | C2H1g16601 | LOC_Os01g23710 | Os01g0339500 | - | Detail |
| CX1g002019 | 1:11,518,093-11,518,323 | - | C1H1g03194 | C2H1g23562 | - | - | - | Detail |
| CX1g006831 | 1:11,522,853-11,526,319 | + | C1H1g16343 | C2H1g14059 | LOC_Os01g23740 | Os01g0339900 | - | Detail |
| CX1g004413 | 1:11,534,830-11,535,309 | - | - | C2H6g27200 | - | - | - | Detail |
| CX1g004085 | 1:11,540,616-11,541,682 | - | C1H1g27277 | C2H1g20040 | LOC_Os01g28660 | Os07g0631500 | - | Detail |
| CX1g005691 | 1:11,549,307-11,549,456 | + | - | - | - | Os07g0616100 | - | Detail |
| CX1g000770 | 1:11,551,511-11,552,140 | - | - | - | - | - | - | Detail |
| CX1g001171 | 1:11,557,196-11,557,381 | - | - | - | - | - | - | Detail |
| CX1g007188 | 1:11,564,447-11,565,211 | - | C1H1g07910 | C2H1g12938 | LOC_Os01g23810 | Os01g0340600 | - | Detail |
| CX1g006027 | 1:11,576,948-11,578,528 | - | C1H1g27399 | C2H1g12938 | LOC_Os01g23850 | Os01g0341000 | - | Detail |