| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g00884 | 2:3,812,648-3,816,106 | + | C2H2g11136 | CX2g022017 | LOC_Os02g08260 | Os02g0179100 | - | Detail |
| C1H2g27338 | 2:3,818,986-3,821,778 | - | C2H2g22090 | CX2g024480 | LOC_Os02g08270 | Os02g0179200 | - | Detail |
| C1H2g15683 | 2:3,827,546-3,832,508 | + | C2H2g18129 | CX2g023864 | LOC_Os02g08300 | Os02g0179300 | - | Detail |
| C1H2g09345 | 2:3,832,904-3,835,074 | - | C2H2g12176 | CX2g022399 | LOC_Os02g08310 | Os02g0179400 | - | Detail |
| C1H2g30953 | 2:3,841,510-3,845,473 | + | C2H2g24288 | CX2g020585 | LOC_Os02g08320 | Os02g0179500 | - | Detail |
| C1H2g15298 | 2:3,846,555-3,848,540 | - | - | CX2g020007 | LOC_Os02g08330 | Os02g0179600 | - | Detail |
| C1H2g23751 | 2:3,850,541-3,855,785 | - | C2H2g01634 | CX2g020510 | LOC_Os02g08350 | Os02g0179800 | - | Detail |
| C1H2g17009 | 2:3,857,894-3,866,840 | + | C2H2g05800 | CX2g023636 | LOC_Os02g08360 | Os02g0179900 | - | Detail |
| C1H2g04017 | 2:3,868,337-3,872,818 | + | C2H2g08895 | CX2g019636 | LOC_Os02g08364 | Os02g0180000 | - | Detail |
| C1H2g13865 | 2:3,873,173-3,875,364 | - | C2H2g28931 | CX2g022824 | LOC_Os02g08370 | Os02g0180100 | - | Detail |
| C1H2g02146 | 2:3,877,404-3,880,606 | + | C2H2g25419 | CX2g023398 | LOC_Os02g08380 | Os02g0180200 | LA2, LTA1 | Detail |
| C1H2g01164 | 2:3,896,213-3,897,816 | + | C2H2g28103 | CX2g022601 | LOC_Os02g08400 | Os02g0180400 | HHC2 | Detail |
| C1H2g08033 | 2:3,901,028-3,903,545 | - | C2H2g19969 | CX2g022893 | LOC_Os02g08410 | Os02g0180500 | - | Detail |
| C1H2g12941 | 2:3,907,813-3,910,813 | + | C2H2g21393 | CX2g022487 | LOC_Os02g08420 | Os02g0180700 | OsCCR21 | Detail |
| C1H2g19399 | 2:3,963,157-3,965,142 | + | C2H2g08597 | CX2g020326 | LOC_Os02g08440 | Os02g0181300 | WRKY71, OsWRKY71 | Detail |
| C1H2g31251 | 2:3,977,406-3,978,517 | + | C2H2g13400 | CX2g018962 | LOC_Os02g08470 | Os02g0181700 | - | Detail |
| C1H2g13602 | 2:3,981,671-3,985,149 | + | C2H2g22677 | CX2g021549 | LOC_Os02g08480 | Os02g0181800 | - | Detail |
| C1H2g14304 | 2:3,986,063-3,991,419 | - | C2H2g06559 | CX2g021572 | LOC_Os02g08490 | Os02g0181900 | - | Detail |
| C1H2g19533 | 2:3,992,506-3,997,145 | - | C2H2g18423 | CX2g020537 | LOC_Os02g08500 | Os02g0182100 | RR24, OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, DLC1 | Detail |
| C1H2g06188 | 2:4,014,849-4,015,442 | - | C2H2g14863 | CX2g019859 | LOC_Os02g08510 | Os02g0182300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004633 | 1:11,171,140-11,176,534 | + | C1H1g03998 | C2H1g27428 | LOC_Os01g22630 | Os01g0329800 | - | Detail |
| CX1g006655 | 1:11,180,708-11,184,117 | + | C1H1g12639 | C2H1g01944 | LOC_Os01g22640 | Os01g0329900 | - | Detail |
| CX1g007268 | 1:11,197,796-11,200,992 | + | C1H1g19397 | C2H1g06794 | LOC_Os01g22660 | Os01g0330100 | - | Detail |
| CX1g006180 | 1:11,201,393-11,202,587 | - | C1H1g03743 | C2H1g22823 | LOC_Os01g22670 | Os01g0330200 | - | Detail |
| CX1g006614 | 1:11,213,440-11,215,065 | + | - | C2H1g09944 | LOC_Os01g22710 | - | - | Detail |
| CX1g003069 | 1:11,217,988-11,218,671 | + | - | - | LOC_Os01g22720 | Os01g0330650 | - | Detail |
| CX1g004068 | 1:11,239,004-11,244,161 | + | C1H1g09878 | C2H1g06111 | LOC_Os01g22780 | Os01g0331100 | - | Detail |
| CX1g001443 | 1:11,254,569-11,257,952 | + | C1H1g18229 | C2H1g00150 | LOC_Os01g22870 | Os01g0331900 | - | Detail |
| CX1g005311 | 1:11,270,011-11,273,417 | + | C1H1g29292 | C2H1g27905 | LOC_Os01g22900 | Os01g0332100 | - | Detail |
| CX1g005606 | 1:11,275,201-11,284,111 | - | C1H1g15812 | C2H1g02015 | LOC_Os01g22920 | Os01g0332200 | GA2OX2, OsGA2ox2, ga2ox 2, OsGA2ox-2 | Detail |
| CX1g006261 | 1:11,294,402-11,297,246 | + | C1H1g25028 | C2H1g25435 | LOC_Os01g22954 | Os01g0332500 | - | Detail |
| CX1g000233 | 1:11,302,191-11,302,340 | - | - | - | - | Os01g0332700 | - | Detail |
| CX1g005436 | 1:11,308,487-11,311,969 | - | C1H1g09638 | C2H1g19970 | LOC_Os01g22980 | Os01g0332800 | - | Detail |
| CX1g002203 | 1:11,314,794-11,317,675 | - | C1H1g01670 | C2H1g05656 | LOC_Os01g22990 | Os01g0332900 | - | Detail |
| CX1g000730 | 1:11,326,894-11,330,580 | - | - | - | LOC_Os10g26770 | - | - | Detail |
| CX1g002087 | 1:11,336,788-11,337,164 | - | - | - | - | - | - | Detail |
| CX1g004352 | 1:11,363,105-11,365,303 | + | C1H1g10843 | C2H1g26385 | LOC_Os01g23370 | Os01g0333600 | - | Detail |
| CX1g003425 | 1:11,368,480-11,368,751 | - | - | - | - | - | - | Detail |
| CX1g006442 | 1:11,383,576-11,385,918 | + | C1H1g07869 | C2H1g15414 | LOC_Os01g23440 | Os01g0335600 | - | Detail |
| CX1g000930 | 1:11,388,816-11,391,425 | + | C1H1g08644 | C2H1g23874 | LOC_Os01g23380 | Os01g0335700 | - | Detail |