| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g19663 | 6:1,774,370-1,775,440 | + | C2H6g00113 | CX6g041208 | LOC_Os06g05190 | Os06g0144000 | OsXRCC1 | Detail |
| C1H6g07683 | 6:1,780,602-1,782,042 | - | C2H6g04638 | CX6g043790 | LOC_Os06g05260 | Os06g0144900 | OsPLL7 | Detail |
| C1H6g25149 | 6:1,783,155-1,788,421 | + | C2H6g17269 | CX6g043358 | LOC_Os06g05250 | Os06g0144800 | - | Detail |
| C1H6g10899 | 6:1,789,715-1,797,030 | + | C2H6g23771 | CX6g045316 | LOC_Os06g05240 | Os06g0144600 | - | Detail |
| C1H6g31237 | 6:1,808,092-1,811,999 | - | C2H6g13388 | CX6g042959 | LOC_Os06g05220 | Os06g0278000 | - | Detail |
| C1H6g11997 | 6:1,814,462-1,815,861 | + | C2H6g27643 | CX6g044318 | LOC_Os06g05272 | Os06g0145000 | OsPLL8 | Detail |
| C1H6g16835 | 6:1,824,655-1,826,225 | + | C2H6g08117 | CX6g044252 | LOC_Os06g05284 | Os06g0145200 | - | Detail |
| C1H6g00499 | 6:1,828,294-1,830,190 | + | C2H6g06407 | CX6g044380 | LOC_Os06g05300 | Os06g0145300 | - | Detail |
| C1H6g27412 | 6:1,831,356-1,834,038 | + | C2H6g10577 | CX6g044398 | LOC_Os06g05310 | Os06g0145600 | - | Detail |
| C1H6g15042 | 6:1,836,364-1,840,428 | + | C2H6g00938 | CX6g044398 | LOC_Os06g05320 | Os06g0145600 | - | Detail |
| C1H6g28860 | 6:1,842,232-1,844,939 | - | C2H6g26989 | CX6g044776 | LOC_Os06g05340 | Os06g0145700 | OsWRI4, OsWRI5a | Detail |
| C1H6g04809 | 6:1,848,365-1,850,980 | + | C2H6g09415 | CX6g041367 | LOC_Os06g05350 | Os06g0145800 | OsWHY1 | Detail |
| C1H6g06658 | 6:1,853,732-1,858,346 | + | C2H6g30158 | CX6g045545 | LOC_Os06g05359 | Os06g0146100 | - | Detail |
| C1H6g06921 | 6:1,861,173-1,865,499 | + | C2H6g30158 | CX6g045545 | LOC_Os06g05359 | Os06g0146100 | - | Detail |
| C1H6g10315 | 6:1,874,261-1,880,113 | + | C2H6g10065 | CX6g042551 | LOC_Os06g05380 | Os06g0146250 | - | Detail |
| C1H6g01868 | 6:1,880,389-1,884,118 | - | C2H6g11563 | CX6g044514 | LOC_Os06g05390 | Os06g0146300 | - | Detail |
| C1H6g20638 | 6:1,884,710-1,886,545 | - | C2H6g22438 | CX6g043905 | LOC_Os06g05400 | Os06g0146400 | - | Detail |
| C1H6g00120 | 6:1,905,500-1,905,856 | - | C2H6g07839 | - | LOC_Os06g05430 | Os06g0147000 | - | Detail |
| C1H6g20647 | 6:1,909,174-1,909,533 | - | C2H6g00032 | - | LOC_Os06g05440 | Os06g0147100 | - | Detail |
| C1H6g01236 | 6:1,921,822-1,924,074 | - | C2H6g00111 | - | LOC_Os06g05480 | Os06g0147400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004633 | 1:11,171,140-11,176,534 | + | C1H1g03998 | C2H1g27428 | LOC_Os01g22630 | Os01g0329800 | - | Detail |
| CX1g006655 | 1:11,180,708-11,184,117 | + | C1H1g12639 | C2H1g01944 | LOC_Os01g22640 | Os01g0329900 | - | Detail |
| CX1g007268 | 1:11,197,796-11,200,992 | + | C1H1g19397 | C2H1g06794 | LOC_Os01g22660 | Os01g0330100 | - | Detail |
| CX1g006180 | 1:11,201,393-11,202,587 | - | C1H1g03743 | C2H1g22823 | LOC_Os01g22670 | Os01g0330200 | - | Detail |
| CX1g006614 | 1:11,213,440-11,215,065 | + | - | C2H1g09944 | LOC_Os01g22710 | - | - | Detail |
| CX1g003069 | 1:11,217,988-11,218,671 | + | - | - | LOC_Os01g22720 | Os01g0330650 | - | Detail |
| CX1g004068 | 1:11,239,004-11,244,161 | + | C1H1g09878 | C2H1g06111 | LOC_Os01g22780 | Os01g0331100 | - | Detail |
| CX1g001443 | 1:11,254,569-11,257,952 | + | C1H1g18229 | C2H1g00150 | LOC_Os01g22870 | Os01g0331900 | - | Detail |
| CX1g005311 | 1:11,270,011-11,273,417 | + | C1H1g29292 | C2H1g27905 | LOC_Os01g22900 | Os01g0332100 | - | Detail |
| CX1g005606 | 1:11,275,201-11,284,111 | - | C1H1g15812 | C2H1g02015 | LOC_Os01g22920 | Os01g0332200 | GA2OX2, OsGA2ox2, ga2ox 2, OsGA2ox-2 | Detail |
| CX1g006261 | 1:11,294,402-11,297,246 | + | C1H1g25028 | C2H1g25435 | LOC_Os01g22954 | Os01g0332500 | - | Detail |
| CX1g000233 | 1:11,302,191-11,302,340 | - | - | - | - | Os01g0332700 | - | Detail |
| CX1g005436 | 1:11,308,487-11,311,969 | - | C1H1g09638 | C2H1g19970 | LOC_Os01g22980 | Os01g0332800 | - | Detail |
| CX1g002203 | 1:11,314,794-11,317,675 | - | C1H1g01670 | C2H1g05656 | LOC_Os01g22990 | Os01g0332900 | - | Detail |
| CX1g000730 | 1:11,326,894-11,330,580 | - | - | - | LOC_Os10g26770 | - | - | Detail |
| CX1g002087 | 1:11,336,788-11,337,164 | - | - | - | - | - | - | Detail |
| CX1g004352 | 1:11,363,105-11,365,303 | + | C1H1g10843 | C2H1g26385 | LOC_Os01g23370 | Os01g0333600 | - | Detail |
| CX1g003425 | 1:11,368,480-11,368,751 | - | - | - | - | - | - | Detail |
| CX1g006442 | 1:11,383,576-11,385,918 | + | C1H1g07869 | C2H1g15414 | LOC_Os01g23440 | Os01g0335600 | - | Detail |
| CX1g000930 | 1:11,388,816-11,391,425 | + | C1H1g08644 | C2H1g23874 | LOC_Os01g23380 | Os01g0335700 | - | Detail |