| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11184 | 1:4,372,099-4,372,701 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| C1H1g27970 | 1:4,399,602-4,400,848 | + | C2H1g05843 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C1H1g11468 | 1:4,401,063-4,403,258 | - | C2H1g21862 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C1H1g10688 | 1:4,404,922-4,408,426 | - | C2H1g17174 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C1H1g13152 | 1:4,410,584-4,419,547 | + | C2H1g04548 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C1H1g06151 | 1:4,419,821-4,423,287 | - | C2H1g08327 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C1H1g16281 | 1:4,434,056-4,436,223 | - | C2H1g05163 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C1H1g29130 | 1:4,441,244-4,445,838 | - | C2H1g20037 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C1H1g00947 | 1:4,468,220-4,470,798 | + | C2H1g26832 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C1H1g03034 | 1:4,478,548-4,485,674 | - | C2H1g03615 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C1H1g10561 | 1:4,496,706-4,497,182 | - | C2H1g17887 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C1H1g31641 | 1:4,501,253-4,502,116 | - | C2H1g30117 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C1H1g28666 | 1:4,508,296-4,510,691 | - | C2H1g28884 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C1H1g30631 | 1:4,512,696-4,513,298 | + | C2H1g00669 | - | - | - | - | Detail |
| C1H1g02897 | 1:4,519,094-4,520,553 | + | C2H1g25043 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C1H1g13131 | 1:4,531,984-4,532,278 | - | C2H1g19433 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C1H1g28746 | 1:4,540,072-4,545,139 | + | C2H1g29514 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g18771 | 1:4,559,913-4,561,620 | + | C2H1g19303 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g05499 | 1:4,579,528-4,580,958 | + | C2H1g12871 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C1H1g14618 | 1:4,606,642-4,613,892 | + | C2H1g28373 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g021894 | 2:23,940,705-23,941,037 | - | - | - | - | Os02g0639800 | - | Detail |
| CX2g019709 | 2:23,942,511-23,942,720 | + | C1H8g29667 | C2H12g29113 | LOC_Os02g37350 | - | - | Detail |
| CX2g022648 | 2:23,942,856-23,943,132 | + | C1H2g15671 | C2H2g08799 | - | - | - | Detail |
| CX2g023257 | 2:23,943,931-23,947,914 | - | C1H2g13831 | C2H2g16613 | LOC_Os02g42700 | Os02g0639900 | - | Detail |
| CX2g024511 | 2:23,948,538-23,950,297 | + | C1H2g09140 | C2H2g01033 | LOC_Os02g42710 | Os02g0640000 | - | Detail |
| CX2g023704 | 2:23,954,494-23,954,760 | - | - | C2H2g28529 | LOC_Os02g42720 | Os02g0640100 | - | Detail |
| CX2g022649 | 2:23,955,280-23,955,756 | + | - | C2H2g16287 | LOC_Os02g49170 | - | - | Detail |
| CX2g022016 | 2:23,958,868-23,961,499 | + | C1H2g17524 | C2H2g12696 | LOC_Os02g42730 | Os02g0640200 | - | Detail |
| CX2g021377 | 2:23,962,419-23,963,597 | - | C1H2g04851 | C2H2g15272 | LOC_Os02g42740 | Os02g0640300 | - | Detail |
| CX2g019878 | 2:23,968,139-23,969,998 | - | C1H2g24160 | C2H2g02390 | LOC_Os02g42780 | Os02g0640500 | SIT1 | Detail |
| CX2g019980 | 2:23,971,609-23,973,540 | + | C1H2g14559 | C2H2g00151 | LOC_Os02g42790 | Os02g0640600 | - | Detail |
| CX2g024790 | 2:23,977,326-23,979,018 | + | C1H2g20340 | C2H2g14056 | LOC_Os02g42810 | Os02g0640800 | - | Detail |
| CX2g023850 | 2:23,980,309-23,981,880 | - | C1H2g00119 | C2H2g23528 | LOC_Os02g42820 | Os02g0641000 | OsPLIM2a | Detail |
| CX2g022946 | 2:23,999,089-24,001,799 | + | C1H2g17415 | C2H2g10376 | LOC_Os02g42850 | Os02g0641300 | Os2R_MYB27 | Detail |
| CX2g020968 | 2:24,006,214-24,011,968 | + | C1H2g20731 | C2H2g08467 | LOC_Os02g42860 | Os02g0641800 | - | Detail |
| CX2g020364 | 2:24,022,100-24,022,252 | - | - | - | - | - | - | Detail |
| CX2g020536 | 2:24,028,035-24,030,071 | - | C1H2g05136 | C2H2g19455 | LOC_Os02g42880 | Os02g0642200 | - | Detail |
| CX2g024310 | 2:24,034,789-24,038,068 | - | C1H2g14682 | C2H2g09165 | LOC_Os02g42890 | Os02g0642300 | - | Detail |
| CX2g020569 | 2:24,043,412-24,051,214 | - | C1H2g11598 | C2H2g12130 | LOC_Os02g42910 | Os02g0642600 | OsSHOC1 | Detail |
| CX2g021385 | 2:24,052,569-24,053,174 | - | - | - | - | - | - | Detail |