| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24558 | 3:215,422-216,951 | + | C2H3g00666 | CX3g025803 | - | Os03g0103400 | - | Detail |
| C1H3g28077 | 3:226,654-228,073 | + | C2H3g07381 | CX3g025211 | LOC_Os03g01530 | Os03g0105600 | - | Detail |
| C1H3g23454 | 3:230,958-233,218 | - | C2H3g12984 | CX3g026334 | LOC_Os03g01540 | Os03g0105700 | OsAHL6 | Detail |
| C1H3g02722 | 3:234,782-238,690 | - | C2H3g00326 | CX3g030126 | LOC_Os03g01550 | Os03g0105800 | - | Detail |
| C1H3g03839 | 3:242,866-245,726 | - | C2H3g00355 | CX3g030694 | LOC_Os03g01570 | Os03g0106000 | - | Detail |
| C1H3g18280 | 3:247,522-252,767 | - | C2H3g00823 | CX3g029689 | LOC_Os03g01580 | Os03g0106200 | - | Detail |
| C1H3g03593 | 3:256,281-260,330 | - | C2H3g10053 | CX3g031070 | LOC_Os03g01590 | Os03g0106300 | PAIR1, Pair1 | Detail |
| C1H3g13137 | 3:260,921-265,419 | - | C2H3g14376 | CX3g025678 | LOC_Os03g01600 | Os03g0106400 | OsBCAT1 | Detail |
| C1H3g09448 | 3:273,006-273,809 | + | C2H3g19859 | CX3g025368 | LOC_Os03g01650 | Os03g0106500 | - | Detail |
| C1H3g20839 | 3:275,633-275,947 | + | C2H3g20988 | - | - | Os03g0106550 | - | Detail |
| C1H3g28471 | 3:278,533-279,336 | + | C2H3g29856 | CX3g030913 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g09211 | 3:284,012-284,815 | + | C2H3g24000 | CX3g029182 | LOC_Os03g01640 | Os03g0106800 | - | Detail |
| C1H3g27934 | 3:287,197-288,000 | - | C2H3g19859 | CX3g029495 | LOC_Os03g01610 | Os03g0106900 | - | Detail |
| C1H3g02983 | 3:291,849-295,865 | - | C2H3g18319 | CX3g030834 | LOC_Os03g01660 | Os03g0107000 | - | Detail |
| C1H3g17953 | 3:297,610-299,591 | + | C2H3g12781 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g31596 | 3:299,600-304,440 | + | C2H3g12928 | CX3g025562 | LOC_Os03g01670 | Os03g0107100 | - | Detail |
| C1H3g21747 | 3:306,940-308,391 | - | C2H3g02258 | CX3g026726 | LOC_Os03g01700 | Os03g0107300 | LSI2, Lsi2, SIET1, OsLsi2 | Detail |
| C1H3g27800 | 3:315,445-323,364 | + | C2H3g07101 | CX3g025905 | LOC_Os03g01710 | Os03g0107400 | - | Detail |
| C1H3g21135 | 3:327,587-331,824 | + | C2H3g28769 | CX3g028047 | LOC_Os03g01720 | Os03g0254900 | - | Detail |
| C1H3g04149 | 3:333,332-334,179 | + | C2H3g28769 | CX3g030693 | LOC_Os03g01720 | Os03g0107500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g020249 | 2:22,903,487-22,905,145 | - | C1H2g02395 | C2H2g08455 | LOC_Os02g40270 | Os02g0616199 | - | Detail |
| CX2g022448 | 2:22,917,376-22,921,173 | - | C1H2g19871 | C2H2g09185 | LOC_Os02g40410 | Os02g0617100 | - | Detail |
| CX2g019193 | 2:22,935,762-22,944,334 | - | C1H2g18153 | C2H2g12073 | LOC_Os02g40430 | Os02g0617300 | - | Detail |
| CX2g022735 | 2:22,960,286-22,961,815 | + | C1H2g29661 | C2H2g17921 | LOC_Os02g40440 | Os02g0617400 | - | Detail |
| CX2g022878 | 2:22,962,472-22,971,021 | + | C1H2g22026 | C2H2g21511 | LOC_Os02g40450 | Os02g0617500 | MER3, OsMER3 | Detail |
| CX2g020956 | 2:22,971,366-22,974,606 | - | C1H2g23006 | C2H2g09254 | LOC_Os02g40454 | Os02g0617600 | - | Detail |
| CX2g019377 | 2:22,975,537-22,983,875 | - | C1H2g02429 | C2H2g18815 | LOC_Os02g40460 | Os02g0617700 | - | Detail |
| CX2g023892 | 2:22,989,495-22,989,989 | + | - | - | - | Os02g0617800 | - | Detail |
| CX2g024793 | 2:22,990,933-22,991,987 | - | - | C2H2g18407 | - | - | - | Detail |
| CX2g024840 | 2:23,010,346-23,012,140 | + | C1H2g02238 | C2H2g04756 | LOC_Os02g40500 | Os02g0618100 | OsGRX9, OsGrx_C2.1 | Detail |
| CX2g024264 | 2:23,013,988-23,016,187 | + | C1H2g04978 | C2H2g05107 | LOC_Os02g40510 | Os02g0618200 | OsPRR1, OsTOC1, OsPRR1/OsTOC1 | Detail |
| CX2g019264 | 2:23,023,956-23,025,539 | - | C1H2g01139 | C2H2g01262 | LOC_Os02g40530 | Os02g0618400 | OsMPS | Detail |
| CX2g024894 | 2:23,040,566-23,042,067 | + | C1H2g19268 | C2H2g01838 | LOC_Os02g40550 | Os02g0618700 | - | Detail |
| CX2g019773 | 2:23,067,415-23,067,600 | + | - | - | - | - | - | Detail |
| CX2g023988 | 2:23,073,818-23,079,008 | - | C1H2g16057 | C2H2g02169 | LOC_Os02g40664 | Os02g0619600 | - | Detail |
| CX2g019895 | 2:23,097,006-23,100,304 | + | C1H2g31349 | C2H2g18142 | LOC_Os02g40680 | Os02g0620100 | - | Detail |
| CX2g020219 | 2:23,100,980-23,101,363 | + | C1H2g31349 | C2H2g10513 | LOC_Os02g40690 | Os02g0620200 | - | Detail |
| CX2g023588 | 2:23,106,411-23,106,847 | + | C1H2g24265 | C2H2g22522 | LOC_Os02g40700 | Os02g0620400 | - | Detail |
| CX2g024155 | 2:23,113,342-23,114,838 | + | C1H2g23096 | C2H2g07540 | LOC_Os02g40710 | Os02g0620500 | OsAMT1;3 | Detail |
| CX2g024932 | 2:23,120,861-23,122,351 | + | C1H2g17359 | C2H2g29061 | LOC_Os02g40730 | Os02g0620600 | AMT1;2, OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1, 3", OsAMT1;3, OsAMT1.3, OsAMT1.2 | Detail |