| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g22211 | 3:7,055,828-7,058,969 | - | C1H3g08518 | CX3g027601 | LOC_Os03g14700 | Os03g0251600 | OsC2DP29 | Detail |
| C2H3g23862 | 3:7,062,815-7,066,933 | + | C1H3g13884 | CX3g025283 | LOC_Os03g14710 | Os03g0251700 | - | Detail |
| C2H3g08409 | 3:7,067,858-7,071,435 | - | C1H3g19434 | CX3g029065 | LOC_Os03g14720 | - | - | Detail |
| C2H3g07197 | 3:7,072,121-7,072,672 | - | C1H3g22396 | CX3g030425 | - | - | - | Detail |
| C2H3g07863 | 3:7,076,919-7,077,896 | - | C1H3g11496 | CX3g028408 | LOC_Os03g14730 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C2H3g26743 | 3:7,094,528-7,095,132 | - | C1H3g17355 | CX3g030146 | - | Os03g0672900 | OsXYN1, OsXyn1 | Detail |
| C2H3g25791 | 3:7,095,211-7,095,489 | - | - | - | - | - | - | Detail |
| C2H3g09632 | 3:7,097,084-7,097,810 | + | C1H3g20834 | CX3g025353 | LOC_Os03g14790 | - | - | Detail |
| C2H3g26671 | 3:7,098,308-7,101,922 | + | C1H3g27328 | CX3g025353 | LOC_Os03g14790 | Os03g0682200 | - | Detail |
| C2H3g27873 | 3:7,103,867-7,109,162 | - | C1H3g10342 | CX3g029321 | LOC_Os03g14800 | Os03g0252800 | - | Detail |
| C2H3g05415 | 3:7,113,624-7,114,199 | - | C1H3g03427 | CX3g026810 | LOC_Os03g14810 | Os03g0252900 | - | Detail |
| C2H3g20389 | 3:7,120,225-7,125,934 | - | C1H3g13989 | CX3g025241 | - | Os03g0253100 | - | Detail |
| C2H3g29944 | 3:7,134,478-7,136,007 | + | C1H3g21796 | CX3g029104 | LOC_Os03g14840 | Os03g0253200 | - | Detail |
| C2H3g07742 | 3:7,149,123-7,150,428 | - | C1H3g30447 | CX3g029003 | LOC_Os03g14860 | Os03g0253500 | - | Detail |
| C2H3g06446 | 3:7,157,043-7,158,059 | - | C1H3g10348 | CX3g028867 | LOC_Os03g14880 | Os03g0253600 | - | Detail |
| C2H3g06821 | 3:7,163,212-7,168,316 | - | C1H3g02049 | - | LOC_Os03g14890 | Os03g0253800 | - | Detail |
| C2H3g12053 | 3:7,170,891-7,174,720 | - | C1H3g17610 | CX3g029243 | LOC_Os03g14900 | Os03g0254000 | - | Detail |
| C2H3g13183 | 3:7,177,515-7,178,305 | + | - | - | - | - | - | Detail |
| C2H3g19284 | 3:7,181,393-7,185,027 | + | C1H3g15353 | CX3g028413 | LOC_Os03g14910 | Os03g0254200 | - | Detail |
| C2H3g17074 | 3:7,185,689-7,186,792 | + | C1H3g13729 | CX3g025235 | LOC_Os03g14915 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g023488 | 2:21,731,401-21,734,452 | - | C1H2g03331 | C2H2g27568 | LOC_Os02g38130 | Os02g0594800 | An-4, OsSGL | Detail |
| CX2g022047 | 2:21,735,753-21,736,536 | - | C1H2g17655 | C2H4g03036 | - | - | - | Detail |
| CX2g020733 | 2:21,739,623-21,741,823 | - | C1H2g12247 | C2H2g08333 | LOC_Os02g38140 | Os02g0594900 | - | Detail |
| CX2g024257 | 2:21,752,774-21,755,388 | - | C1H2g09203 | C2H2g24282 | LOC_Os02g38160 | Os02g0595100 | - | Detail |
| CX2g021248 | 2:21,766,374-21,766,898 | + | - | - | LOC_Os02g38170 | Os02g0595200 | - | Detail |
| CX2g021227 | 2:21,770,317-21,771,217 | - | C1H2g18043 | C2H2g12684 | LOC_Os02g38180 | Os02g0595300 | - | Detail |
| CX2g019326 | 2:21,774,066-21,774,674 | - | - | - | LOC_Os02g38190 | Os02g0595400 | - | Detail |
| CX2g023998 | 2:21,775,541-21,779,005 | - | C1H2g28766 | C2H2g27779 | LOC_Os02g38200 | Os02g0595500 | - | Detail |
| CX2g024107 | 2:21,780,786-21,782,189 | + | C1H2g02203 | C2H2g10443 | LOC_Os02g38210 | Os02g0595700 | - | Detail |
| CX2g023123 | 2:21,785,069-21,788,696 | + | C1H2g15529 | C2H2g13918 | LOC_Os02g38220 | Os02g0595800 | - | Detail |
| CX2g024625 | 2:21,789,900-21,791,586 | - | C1H2g13753 | C2H2g12990 | LOC_Os02g38230 | Os02g0595900 | NAR2.1, OsNAR2.1, OsNRT3.1A | Detail |
| CX2g021096 | 2:21,796,006-21,798,684 | - | C1H2g12816 | C2H2g05640 | LOC_Os02g38240 | Os02g0596000 | - | Detail |
| CX2g020732 | 2:21,801,175-21,809,807 | - | C1H2g21293 | C2H2g05424 | LOC_Os02g38250 | Os02g0596100 | - | Detail |
| CX2g020902 | 2:21,811,441-21,813,307 | + | C1H2g16769 | C2H2g17152 | LOC_Os02g38260 | Os02g0596200 | LSSR1 | Detail |
| CX2g024363 | 2:21,816,225-21,817,425 | - | C1H2g00956 | C2H2g06504 | LOC_Os02g38290 | Os02g0596300 | CYP94E1, OsCYP94E1 | Detail |
| CX2g024642 | 2:21,822,066-21,825,233 | - | C1H2g15841 | C2H2g22627 | LOC_Os02g38300 | Os02g0596500 | - | Detail |
| CX2g023192 | 2:21,831,735-21,833,795 | + | C1H2g27617 | C2H2g10630 | LOC_Os02g38320 | Os02g0596700 | - | Detail |
| CX2g022944 | 2:21,834,984-21,835,362 | - | C1H2g26547 | C2H2g00192 | LOC_Os02g38330 | - | - | Detail |
| CX2g023966 | 2:21,837,165-21,841,003 | + | C1H2g07087 | C2H2g14667 | LOC_Os02g38340 | Os02g0596900 | - | Detail |
| CX2g022445 | 2:21,842,185-21,844,156 | - | C1H2g18301 | C2H2g08738 | LOC_Os02g38350 | Os02g0597000 | - | Detail |