| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09365 | 3:14,022,692-14,029,760 | - | C1H3g05327 | CX3g027782 | LOC_Os03g27510 | Os03g0393700 | - | Detail |
| C2H3g30087 | 3:14,032,064-14,034,436 | - | C1H3g01352 | CX3g026293 | LOC_Os03g32580 | Os03g0211900 | - | Detail |
| C2H3g11623 | 3:14,034,559-14,035,580 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g10908 | 3:14,044,828-14,047,298 | - | C1H3g19955 | CX3g027788 | LOC_Os03g32580 | Os03g0145102 | - | Detail |
| C2H3g03280 | 3:14,048,897-14,050,147 | + | - | - | - | - | - | Detail |
| C2H3g07142 | 3:14,050,595-14,051,936 | + | - | - | - | - | - | Detail |
| C2H3g17405 | 3:14,057,376-14,058,446 | - | - | - | - | - | - | Detail |
| C2H3g04527 | 3:14,069,232-14,069,991 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g28189 | 3:14,070,010-14,070,943 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g21452 | 3:14,083,851-14,085,452 | - | C1H3g17401 | CX3g029574 | - | Os03g0184000 | OsPDS | Detail |
| C2H3g10220 | 3:14,094,321-14,100,635 | - | C1H3g27278 | CX3g031229 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g08253 | 3:14,104,054-14,104,308 | - | - | - | - | - | - | Detail |
| C2H3g06277 | 3:14,167,794-14,171,626 | - | C1H3g13238 | CX3g029516 | LOC_Os03g32580 | Os03g0773700 | - | Detail |
| C2H3g13071 | 3:14,219,645-14,219,983 | - | - | - | LOC_Os02g28210 | - | - | Detail |
| C2H3g00521 | 3:14,231,740-14,241,021 | - | C1H3g28596 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C2H3g03469 | 3:14,295,554-14,300,370 | - | C1H3g26998 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C2H3g01147 | 3:14,307,579-14,309,156 | + | C1H3g17152 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C2H3g26978 | 3:14,380,764-14,384,352 | - | C1H3g03234 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C2H3g09617 | 3:14,398,273-14,401,752 | - | C1H3g11733 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C2H3g01443 | 3:14,407,064-14,410,216 | + | C1H3g19183 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX2g022080 | 2:21,595,860-21,596,054 | + | - | - | - | Os02g0630650 | - | Detail |
| CX2g023971 | 2:21,596,630-21,600,891 | - | C1H2g27123 | C2H2g24155 | LOC_Os02g37910 | Os02g0592200 | - | Detail |
| CX2g021962 | 2:21,604,108-21,609,591 | - | C1H2g00585 | C2H2g30097 | LOC_Os02g37920 | Os02g0592300 | OsPMS1 | Detail |
| CX2g018877 | 2:21,613,495-21,615,840 | + | C1H2g24188 | C2H2g19116 | LOC_Os02g37930 | Os02g0592400 | - | Detail |
| CX2g020482 | 2:21,617,037-21,619,406 | - | C1H2g18659 | C2H2g25858 | LOC_Os02g37940 | Os02g0592500 | - | Detail |
| CX2g019235 | 2:21,621,328-21,623,914 | + | C1H2g07685 | C2H2g03437 | LOC_Os02g37950 | Os02g0592600 | - | Detail |
| CX2g021639 | 2:21,628,153-21,628,792 | - | C1H2g29428 | C2H2g12810 | LOC_Os02g37970 | Os02g0592833 | OsFLZ5 | Detail |
| CX2g022075 | 2:21,630,936-21,631,145 | - | - | - | - | Os02g0630650 | - | Detail |
| CX2g022606 | 2:21,637,138-21,645,523 | - | C1H2g16543 | C2H2g28811 | LOC_Os02g37990 | Os02g0593100 | - | Detail |
| CX2g020754 | 2:21,651,394-21,654,236 | + | C1H2g02941 | C2H2g02538 | LOC_Os02g38020 | Os02g0593500 | - | Detail |
| CX2g020428 | 2:21,655,511-21,655,907 | - | C1H2g00528 | C2H2g07587 | LOC_Os02g38029 | Os02g0593400 | - | Detail |
| CX2g021015 | 2:21,658,368-21,660,660 | + | C1H2g31252 | C2H2g02659 | LOC_Os02g38040 | Os02g0593600 | OsIRL2 | Detail |
| CX2g022113 | 2:21,661,610-21,666,727 | - | C1H2g28738 | C2H2g02107 | LOC_Os02g38050 | Os02g0593700 | - | Detail |
| CX2g022962 | 2:21,670,803-21,675,241 | + | C1H2g05228 | C2H2g27414 | LOC_Os02g38060 | Os02g0593900 | - | Detail |
| CX2g021854 | 2:21,677,100-21,677,306 | + | - | - | - | Os02g0630650 | - | Detail |
| CX2g020918 | 2:21,681,306-21,684,535 | + | C1H2g19613 | C2H2g28617 | LOC_Os02g38080 | Os02g0594100 | - | Detail |
| CX2g019982 | 2:21,698,436-21,699,455 | + | C1H2g23870 | C2H2g10301 | LOC_Os02g38090 | Os02g0594300 | NDL1 | Detail |
| CX2g022653 | 2:21,712,285-21,714,743 | + | C1H2g26025 | C2H2g22920 | LOC_Os02g38120 | Os02g0594700 | OsBTBN3 | Detail |
| CX2g022687 | 2:21,721,001-21,721,166 | + | - | - | - | - | - | Detail |
| CX2g020125 | 2:21,730,225-21,730,458 | + | - | - | - | Os02g0594750 | - | Detail |